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gtaagttcctatcttgttttcaacttatataagaattttggaatgagtcgaaagtctatctgatcaaattgtatcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCATTCCTGCCGTCAAGTCCTTGTTGGTGGAGGTAGGGCCTGGCGCCAGCG
species | Zea mays |
transcript | GRMZM2G033828_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCEST: gi|67026333|gb|CO455082.1|CO455082
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
EST: AAGTTTTCCGAAGCGTGTATGTTCATTGGCCCCCA-GAAGCCGTAACGGG AAAACAGGAGAAAGAC-ACGTTGACATCATCACTTTCTANCA-CGAAGTATEST: gi|30031776|gb|CB833627.1|CB833627
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAA-GACCACGTCGACATCATCACTTTCTA-CAACGAAGTAT
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCEST: gi|29544714|gb|CB605094.1|CB605094
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCEST: gi|30088299|gb|CB886504.1|CB886504
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCCTACAACGAAGTATTEST: gi|27575967|gb|CA998661.1|CA998661
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTT-CTACAACGAAGTATT
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCEST: gi|89756605|gb|DY686579.1|DY686579
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCEST: gi|30031712|gb|CB833563.1|CB833563
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
EST: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGG AAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
genomic: AAGTTTTCCGAAGCGTCTATGTTCATTGGCCCCCAAGAAGCCGTAACGGGgtaagttcct ... atcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTC
tataagaattttggaatgagtcgaaagtctatctgatcaaattgtatcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCATTCCTGCCGTCAAGTCCTTGTTGGTGGAGGTAGGGCCTGGCGCCAGCG
atctgat putative branch site (score: 7)
tcctgcc putative PPT
aaattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcctatcttgttttcaacttatataagaattttggaatgagtcgaaagtctatctgatcaaattgtatcctgccagAAAACAGGAGAAGACCACGTCGACATCATCACTTTCTACAACGAAGTATTCATTCCTGCCGTCAAGTCCTTGTTGGTGGAGGTAGGGCCTGGCGCCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG