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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGCGAGGTGCTTGATCTTGTCGTGTCGATCTCAGGTCGTGAGCGCGCCGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcacatttctctctttcttggacaaggaggagggcggtaaaatgtcttgtttaaccagaggagtgtttctcaggatgcgtatgagtgataggtta...

Basic information

species Zea mays
transcript GRMZM2G032423_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032423_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g09310.2 (Oryza sativa), 5'ss of exon 1
ACCAGCGAGGTGCTTGATCTTGTCGTGTCGATCTCAGGTCGTGAGCGCGCCGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcacatttctctc-----tttcttggacaaggaggagggcggtaaaatgtcttgtttaaccagaggagtgtttctcaggatgcgtatgagtgataggtta
 | ||||||||||| ||||| ||||||||| | || || || |||||||||||||| || ||||||| ||| || || || || ||  |||| |||||| |||||   || |    |      ||| | ||   |  |    |  | |   |  | | || | |      ||   | | | | ||   || | ||| || ||| |
GCGAGCGAGGTGCTCGATCTGGTCGTGTCGGTGTCTGGCCGGGAGCGCGCCGTTGAGGCTTTCGTCGGCCTTGGGCTCGATCTTGAGAAGCACATGCCAGgtaagattcactcggttaacaaatttttcggtttacaaaattgttgattttac-tgtggtcttat--atagaacttatgtgaagaaatgt-tcagtcat-ggtca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291847|gb|DV031415.1|DV031415
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|148948642|gb|EC898556.2|EC898556
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTNCAA-
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGT-CAAA
EST: gi|149013864|gb|EE043348.2|EE043348
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|91875202|gb|EB405159.1|EB405159
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAAAAAATGGGAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: -GTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|148987143|gb|EE030971.2|EE030971
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAAGCTAGAGGCAGTCAAA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACA-GCTAGAGGCAGTCAAA
EST: gi|71774896|gb|DR972774.1|DR972774
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|89758269|gb|DY687513.1|DY687513
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|211515655|gb|FL144144.1|FL144144
EST:     CGTTGATGCGTTCGTCGTCCTGGGGCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAA
EST: gi|76013592|gb|DT940762.1|DT940762
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAANATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|71426870|gb|DR807920.1|DR807920
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGGTAA-CAAAAACAAACAGCTAGAGGCAGTCAAA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGG-TAAACAAAAACAAACAGCTAGAGGCAGTCAAA
EST: gi|211515654|gb|FL144143.1|FL144143
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAA-CAAACAGCTAGGAG-CAGTCAAA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAG-AGGCAGTCAAA
EST: gi|149004197|gb|EE039006.2|EE039006
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|71307567|gb|DR790004.1|DR790004
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACA
EST: gi|149081925|gb|EE171087.2|EE171087
EST:     CGGTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAA
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAA
EST: gi|71770772|gb|DR968709.1|DR968709
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
EST: gi|148941362|gb|EC886271.2|EC886271
EST:     CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAA                         TCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT
genomic: CGTTGATGCGTTCGTCGTCCTGGGCCTGGACCTCGACCAGCATATGCCAAgtaagtcaca ... tttgcaccagTCCTCATTCAGAAAATGGTAAACAAAAACAAACAGCTAGAGGCAGTCAAAT