1 5' 3' | 2 5' 3' | 3 5' 3' |
...nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaaagggggtttttagagattcgtcacagGGGAAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGGTTTTGGGCGAGGCCGTGGTGGTGGTTCTTTCCGCGGTGGAAGAGGACCAC
species | Zea mays |
transcript | GRMZM2G032419_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAA GGGACAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGTGGAGGAAGGGGEST: gi|29130259|gb|CB380963.1|CB380963
genomic: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAAgtatgagctc ... ttcgtcacagGGGA-AATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGG
EST: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAA GGGACAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGTGGAGGAAGGGGEST: gi|211003875|gb|FL081482.1|FL081482
genomic: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAAgtatgagctc ... ttcgtcacagGGGA-AATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGG
EST: TCGACCCAATGAAATTGCTGCCGCTCTTCACGCTTCCTGCCACAACCAAA GGGACAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGTGGAGGAEST: gi|60343373|gb|DN210346.1|DN210346
genomic: TCGACCCAATGAAATTGCTGCCGCTCT-CACGCTTCCTGCCACAACCAAAgtatgagctc ... ttcgtcacagGGGA-AATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGA
EST: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAA GGGACAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGTGGAGGAAGGGGEST: gi|211457056|gb|FL081473.1|FL081473
genomic: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAAgtatgagctc ... ttcgtcacagGGGA-AATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGG
EST: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAA GGGACAATCTCAA
genomic: ATCGACCCAATGAAATTGCTGCCGCTCTCACGCTTCCTGCCACAACCAAAgtatgagctc ... ttcgtcacagGGGA-AATCTCAA
nnnnnnnnnnnnnnnnnnnnnnnccccaaagggggtttttagagattcgtcacagGGGAAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGGTTTTGGGCGAGGCCGTGGTGGTGGTTCTTTCCGCGGTGGAAGAGGACCAC
tttttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccccaaagggggtttttagagattcgtcacagGGGAAATCTCAAGGAGCACCTAGAGGTGGTGGGCGTGGGGGAGGAAGGGGTTTTGGGCGAGGCCGTGGTGGTGGTTCTTTCCGCGGTGGAAGAGGACCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA