1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatacacaaaagttccaaacattctaggttgattacagtatcattatagtttgtgattggaacttttgcataataattgtactaattaacacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTTTGGCTTCTTTTGCAACTGAGGATTATGATGCTATGGCCTCTGCCCTCTC
species | Zea mays |
transcript | GRMZM2G031780_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGAAACCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTG GGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTTEST: gi|211409698|gb|FL229021.1|FL229021
genomic: TGGAAACCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTGgtatgctgta ... cacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTT
EST: TGGGAATCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTG GGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTTEST: gi|24934308|gb|CA452526.1|CA452526
genomic: TGGAAACCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTGgtatgctgta ... cacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTT
EST: TGGAAACCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTG GGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTT
genomic: TGGAAACCTATGGTTGCTCCGTGATGGGCGAATTGGTTTTATTGATTTTGgtatgctgta ... cacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTT
tatagtttgtgattggaacttttgcataataattgtactaattaacacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTTTGGCTTCTTTTGCAACTGAGGATTATGATGCTATGGCCTCTGCCCTCTC
cacttctc CT-rich tract
ataataattgtactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatacacaaaagttccaaacattctaggttgattacagtatcattatagtttgtgattggaacttttgcataataattgtactaattaacacttctcagGGATTGTTGGTCGAATATCTCCAAGAACTTGGGCAGCTATGGAGGTCTTTTTGGCTTCTTTTGCAACTGAGGATTATGATGCTATGGCCTCTGCCCTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - acacaaa
- - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt