Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211023728|gb|FL449217.1|FL449217EST: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTATTTCTTGATCTG GTCAGGGTGAGCGAGTCTTACGGGCTGAAGTTTCCTCGGGAGTTTGCTCTT
genomic: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTGgtgagttact ... catttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
EST:
gi|211125159|gb|FL454370.1|FL454370EST: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTG GTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
genomic: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTGgtgagttact ... catttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
EST:
gi|78089905|gb|DV518279.1|DV518279EST: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTG GTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
genomic: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTGgtgagttact ... catttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
EST:
gi|24934308|gb|CA452526.1|CA452526EST: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTG GTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
genomic: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTGgtgagttact ... catttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
EST:
gi|94475889|gb|EB704847.1|EB704847EST: TTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTG GTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
genomic: CTAATGTTGTCCTTGATGAGAGGCAGATGAATGCTCTTTTTCTTGATCTGgtgagttact ... catttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agactaagaaaatagaaaacgaaagatttgacacttttgatatcgcatttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTTCTCATGAAGCAGCTGCTGTATTTTGATCGCTACACAAGACTGCTGGCTC
ttttgat putative branch site (score: 4)
catttccc putative PPT
aagaaaatagaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttcgtgaatttttcccgagctataacatacgtactacttttgcgagactaagaaaatagaaaacgaaagatttgacacttttgatatcgcatttcccagGTCAGGGTGAGCGAGTCTTACGGGCTGAAATTTCCTCGGGAGTTTGCTCTTCTCATGAAGCAGCTGCTGTATTTTGATCGCTACACAAGACTGCTGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT