Sequence
atgc intronic sequence ATGC exonic sequence...attctctttaactgtgctgcgaaatttgactagtttgctttgataattctgttgagctgtgtccgtttgtaaattgtaatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030235_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os05g06980.1 (Oryza sativa), 3'ss of exon 11
---attctctttaactgtgct----gcgaaatttgactagt-ttgctttgataattctgttgagctgtgtccgtttgtaaattgtaatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
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ctggacacctcatactatgttctatttgaatttagaataccgttttcacgacagttgt-ttgaattatgttctttt-tata----aaaagtatttctcaactgca--gGTCAATATATCACTAAATGCTGCTGCTGGACGCCTCAAGAAAACCAGGGAAGAGAGGGACCAATTTGATGAAGCAAACAATCAAATTATATTTAAATTAA
upper sequence: GRMZM2G030235_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA20G38530.1 (Glycine max), 3'ss of exon 11
--attctctttaactgtgctgcgaaatttgactagtttgctttgata---attctgttgagctgtgtccgtttgtaaattgtaatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
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tgattccactttaataatctatgggatgctgttggttggtggagccatgaatcctgt--aactagatttataaataa-ttgaaacctggcttctga--ggtgtagGTTAGCACTACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAAGAAGCAAACAATCAGATAGTTGAACACCTGA
upper sequence: GRMZM2G030235_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA10G43840.1 (Glycine max), 3'ss of exon 11
-attctctttaactgtgctgcgaaatttgactagtttgctttgataattctgttgagctgtg---tccgtttgtaaattgt-aatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
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aatgactcctcactttaat----aatct-atggggtattgttggtggatccgtgaagcctttaacttgatttataaataattgaaacctggcttctgaggtgtagGTTAGCACTACTTTGGCTGCTGCTCAAGCACGACTATGGAATGTGAGGGAAGAGAGAGACCAGTTTGAGGAAGCAAACAATCAGATAGTTGAACACCTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60342854|gb|DN209827.1|DN209827EST: TTGGTGAACTCCGCTTATGCTCTAGAGTTGAAGAACTTCTGCTGAAGAAGAAATCAATCACTCTTGGTGACTCCCTGGAGATTCATTCTCAGAAG
genomic: TTGGTGAACTCCGCTTATGCTCTAGAGTTGAAGAACTTCTGCTGAAGAAGAAATCAATCACTCTTGGTGACTCCCTGGAGATTCATTCTCAGAAG
EST:
gi|71301747|gb|DR786942.1|DR786942EST: TTGGTGAACTCCGCTTATGCTCTAGAGTTGAAGAACTTCTGCTGAAGAAGAAATCAATCACTCTTGGTGACTCCCTGGAGATTCATTCTCAGAAG
genomic: TTGGTGAACTCCGCTTATGCTCTAGAGTTGAAGAACTTCTGCTGAAGAAGAAATCAATCACTCTTGGTGACTCCCTGGAGATTCATTCTCAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attctgttgagctgtgtccgtttgtaaattgtaatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
ttcttcattt CT-rich tract
tttgtaaattgtaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attctctttaactgtgctgcgaaatttgactagtttgctttgataattctgttgagctgtgtccgtttgtaaattgtaatattattcttcatttgcacagGTTAATATATCACTAAATGCTGCTGCTGGACGGCTCAAACAAACTAGGGAAGAGAGGGACCAATTTGACGAAGCAAACAATCAAATCATATTTAGCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA