Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGCGCACCGCGGCGACATGGACCACGTCAAGCACGCCCTCACCCTCTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctttcctcttggtgatgatgctgggttgctgccgcggattatattggtggaatagcttgcgcatgattttgatttcagatttctccctgtgctgccggtggcggttgtttctgaatggctgtactgaccgaaccgttggtgttgcatgctctgcagctc

Basic information

species Zea mays
transcript GRMZM2G029087_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029087_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g03280.3 (Oryza sativa), 5'ss of exon 5
----GAGAGGGCGCACCGCGGCGACATGGACCACGTCAAGCACGCCCTCACCCTCTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctttcctcttggtgatgatgctgggttgctgccgcggattatattggtggaatagcttgcgcatgattttgatttcagatttctccctgtgctgccggtggcggttgtttctgaatggctgtactgaccgaaccgttggtgttgcatgctctgcagctc
    |||||||| |||| ||| ||||||||| || |||||||||| |||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||    |   ||  |||  || | |   ||     |  || | |  |  ||||  |  ||    |  |  |||||  | |||   | | ||  |    |         |     | |||   | || |                                      
CATCGAGAGGGCTCACCACGGTGACATGGACTACATCAAGCACGCACTCACCCTCTTCACTGACTTCGTGGCCGTCCTTGTCCGGATCCTCGTCATCATGgtgagtaca-tgactcagcttactgctcaatttgctcatcatcctccgtatgcattgccgcgat----tcggtttgattcggcttttgaaatgctgacctgacgatgaacacccacaatgtctccgttgcag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71432249|gb|DR813299.1|DR813299
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGAAAGA-GAAGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149046683|gb|EE048073.2|EE048073
EST:     CTTCACAGACTTCGTGGGCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCG
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCG
EST: gi|74244275|gb|DT652189.1|DT652189
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTNC                         A-GAACGGGGCCGACAAGTCGG
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGG
EST: gi|76288415|gb|DV027983.1|DV027983
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|67014096|gb|CO442845.1|CO442845
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|76011040|gb|DT938210.1|DT938210
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|78105316|gb|DV523734.1|DV523734
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149048849|gb|EE048352.2|EE048352
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACCAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149008168|gb|EE040356.2|EE040356
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGCCAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149008169|gb|EE040357.2|EE040357
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGGCGACAAGTC
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTC
EST: gi|149103195|gb|EE288568.2|EE288568
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTC
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTC
EST: gi|111190431|gb|EE288567.1|EE288567
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGCCAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|76013720|gb|DT940890.1|DT940890
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAAAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149110917|gb|EE294415.2|EE294415
EST:     CTTCACAGACTTCGTGGCCGTCTTCGTCCGCGTCCTGGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|109637514|gb|EC591059.1|EC591059
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|148954442|gb|EC899865.2|EC899865
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|50328016|gb|CO523142.1|CO523142
EST:     TTTCACAGACTTGGTGGCCGTCCTCGTCCGCGTCCTGGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|18178570|gb|BM379780.1|BM379780
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|71432248|gb|DR813298.1|DR813298
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|76288416|gb|DV027984.1|DV027984
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCTTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTC
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTC
EST: gi|51592969|gb|CV072115.1|CV072115
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|47961573|gb|CN844282.1|CN844282
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149086320|gb|EE175861.2|EE175861
EST:     CTTCACAGACTTGGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|148964263|gb|EE015455.2|EE015455
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGAACA-GTCGGAGG
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGA-CAAGTCGGAGG
EST: gi|78110664|gb|DV529067.1|DV529067
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|51593042|gb|CV072188.1|CV072188
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|32863120|gb|CF002802.1|CF002802
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|74232622|gb|DT640536.1|DT640536
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|67041238|gb|CO467493.1|CO467493
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCCGACA-GTCGGAGGACAAGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCC-GACAAGTCGGAGGACAAGA
EST: gi|76013719|gb|DT940889.1|DT940889
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|149108187|gb|EE292532.2|EE292532
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|148997294|gb|EE035788.2|EE035788
EST:     CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCTCA                         A-GAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
EST: gi|50323899|gb|CO519025.1|CO519025
EST:     CTTCACAGACTTGGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGCT-C                         AAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA
genomic: CTTCACAGACTTCGTGGCCGTCCTCGTCCGCGTCCTCGTCATCATGGTGAgtgagctctt ... tctgcagctcAAGAACGGGGCCGACAAGTCGGAGGACAAGAAGAGGAAGAAGAGGTCGTGA