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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTGGGTGGGCTGCTCTCGTCGGGGCTCTCCATCCTGCTCTGGCTGCAGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcctgcctctatcctcttttaatttataatccgatggagcaacagtgtatccattgcttgtccgtctgtgagatgcatgcacacagcagccttggcttgaacacttgcttgctttctcctcctgcag

Basic information

species Zea mays
transcript GRMZM2G029087_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029087_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g03280.2 (Oryza sativa), 5'ss of exon 4
CTACCTGGGTGGGCTGCTCTCGTCGGGGCTCTCCATCCTGCTCTGGCTGCAGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcctgcctctatcctctt-ttaatttataatccgatggagca-acagtgtatccattgcttgtccgtctgtgagatgcatgcacacagcagccttggcttgaacacttgcttgctttctcctcctgcag
|||||| |||||  ||||||| || || |||||||||||||||||||||||| | ||||  |||||||| ||||||||| |   |||||||||||| ||||||     |||   ||||  |||| |  | |  |||    ||  | || ||   | |||| |||| ||  |  |||  | |||  ||    |  | ||                                     
CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactggggctatattcttgtccaatcctaac---atacaacatactacgcatcctttgcctgaaca-ctgatacatgtgtggtttctcctgcag-----------------------------------