Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67017857|gb|CO446606.1|CO446606EST: CTTCTCTTATACGTACTTCTG-AATTTATGTTTCTCAG GCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGT
genomic: CTTCTCTGAGACGTACTTCTGAAATTTATGTTTTTCAGgtgctgcttc ... attggttcagGCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 3 RNA-Seq libraries.
Block sizes:
37 (upstream exon),
48 (downstream exon)
Score:
2CTTCTCTGAGACGTACTTCTGAAATTTATGTTTTTCAGgtgctgcttc ... attggttcagGCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGTCGCCCATACTCGCTTCCCCGCACCCTCCACTTCCTCGTCGCCGTGCTGA
Block sizes:
28 (upstream exon),
49 (downstream exon)
Score:
11CTTCTCTGAGACGTACTTCTGAAATTTATGTTTTTCAGgtgctgcttc ... attggttcagGCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGTCGCCCATACTCGCTTCCCCGCACCCTCCACTTCCTCGTCGCCGTGCTGA
Block sizes:
45 (upstream exon),
49 (downstream exon)
Score:
8CTTCTCTGAGACGTACTTCTGAAATTTATGTTTTTCAGgtgctgcttc ... attggttcagGCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGTCGCCCATACTCGCTTCCCCGCACCCTCCACTTCCTCGTCGCCGTGCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttatggattcgttttaaatctgatataccatttcgttttggattggttcagGCAATAAGGATGCCAAATCTGCAGCTTCGCCAACAGGAGCAGTTTCTGGGTCGCCCATACTCGCTTCCCCGCACCCTCCACTTCCTCGTCGCCGTGCTGA
atctgat putative branch site (score: 8)
ttttaaatctgatata TA-rich tract
