1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatattttggctgccatgtaatgaatagatgtgtgattagtatgcatgactggcagttttcctgattctattatatttttgtattttgtgaacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGCAGGACAATCTCCAAGCAAAAGGCTCATGGTTAATGCATGCAGCTGGCC
species | Zea mays |
transcript | GRMZM2G028492_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|211462109|gb|FK976052.1|FK976052
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|211462107|gb|FK976050.1|FK976050
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|211462108|gb|FK976051.1|FK976051
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|86467534|gb|DY233904.1|DY233904
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGGGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|211462110|gb|FK976053.1|FK976053
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|71324055|gb|DR798716.1|DR798716
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|91048284|gb|EB158702.1|EB158702
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGEST: gi|71422392|gb|DR805714.1|DR805714
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
EST: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAG GTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
genomic: CGAGGCGCTCCAAGCGCGTTTCGTGGGCCACCGGGGCCAATCTCTGCAAGgtattgtgat ... aacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCG
atgactggcagttttcctgattctattatatttttgtattttgtgaacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGCAGGACAATCTCCAAGCAAAAGGCTCATGGTTAATGCATGCAGCTGGCC
tcctgat putative branch site (score: 50)
attctattatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattttggctgccatgtaatgaatagatgtgtgattagtatgcatgactggcagttttcctgattctattatatttttgtattttgtgaacctgtcagGTAAGGTTTTTTATTTCGGAGGATTCCCCTTCTCAAGCTGGATTGAGACCGCAGGACAATCTCCAAGCAAAAGGCTCATGGTTAATGCATGCAGCTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - ggctgcc
- - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattt