1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgttaattttgtctagttaaatatcctgatcagaagatctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
species | Zea mays |
transcript | GRMZM2G028004_T03 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTTTTTTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|5607895|gb|AI901562.1|AI901562
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|37381864|gb|CF627835.1|CF627835
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTEST: gi|91051068|gb|EB161486.1|EB161486
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
EST: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTTTGGAGCATG GGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
genomic: GATTGTGTGTTAAGCCAAACAAAGGGGACGCTGTTCTCTTCTGGAGCATGgtgtgttaat ... cttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTT
atctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
cttgttcc CT-rich tract
tattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttaattttgtctagttaaatatcctgatcagaagatctttattagagtcatctcagttgtgttcttttggcctcggggacttgttccagGGATTGGATGGTAACACAGACCCAAACAGTATCCACAGCGGGTGCCCTGTTCTGAAAGGAGAGAAATGGTCCGCGACGAAATGGATGAGGCAGAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG