1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGTACGGCGGCTACGGCGGCGGCGGCGAAGGCTGGGGCTACGACTCGATGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTCgtaatatacgccccccctcctcccgtatattccttccttgccgttgagaactgcgaatgccaccggttggattggaatggatgcatgattcgtcgtaagg...
species | Zea mays |
transcript | GRMZM2G027726_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTC GTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTACEST: gi|148967054|gb|EE018214.2|EE018214
genomic: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTCgtaatatacg ... tttcctgcagGTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTAC
EST: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTC GTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTACEST: gi|149077720|gb|EE166430.2|EE166430
genomic: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTCgtaatatacg ... tttcctgcagGTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTAC
EST: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTC GTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTAC
genomic: TGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTCgtaatatacg ... tttcctgcagGTTTACCTCACCCTATGCGTGGCGCTGGCCTCGTCGGCGGTGGGCGCGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTACGGCGGCTACGGCGGCGGCGGCGAAGGCTGGGGCTACGACTCGATGAAGAACTTCCGCCAGATCAGCCCCGCCGTCCAGACCCACCTCAAGCTCgtaatatacgccccccctcctcccgtatattccttccttgccgttgagaactgcgaatgccaccggttggattggaatggatgcatgattcgtcgtaagg
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc