Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16377753|gb|BI992103.1|BI992103EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|13126633|gb|BG317203.1|BG317203EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTCAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|13126007|gb|BG316682.1|BG316682EST: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
genomic: ACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
EST:
gi|13126178|gb|BG316748.1|BG316748EST: GGGAGGATGACGAGGGAGCAG TACGGAGCACTTAGGCGGAAGATTGGTGGCACCTGCCAGGATTTCTTCAAG
genomic: GGGAGGATGACGAGGGAGCAGgtgtgtatca ... tgcaatgaagTACGGAGCACTTAGGCGGAAGATTGGTGGCACCTACCAGGATTTCTTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCGCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCCGAGCTGCTGTACGAGGCCAGGGAGTCCACCAGAGGTGGAGGGAGGATGACGAGGGAGCAGgtgtgtatcatgcaaagcaactgcggctcgataatgttatgttatcatccgtaatctgatttatttgttgtttgatttgcaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG