1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtactttcttatataacttagtgtcaatttgctctctcttgatatgatgacaagaattatatatttccgctattccaaacagGGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAACCACTCCAAGTGGCTGCAAACAGTGGCAAAGAAACCTGATGCCATTATGT
species | Zea mays |
transcript | GRMZM2G026447_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACCAAATAACCTGCACCTTTCTAGCTACTCTGAAACATCAACCAAGGAT GGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAACEST: gi|8367933|gb|BE050878.1|BE050878
genomic: AACCAAATAACCTGCACCTTTCTAGCTACTCTGAAACATCAACCAAGGATgtatgtactt ... ttccaaacagGGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAAC
EST: AACCAAATAACCTGCACCTTTCTAGCTACTCTGAAACATCAACCAAGGAT GGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAAC
genomic: AACCAAATAACCTGCACCTTTCTAGCTACTCTGAAACATCAACCAAGGATgtatgtactt ... ttccaaacagGGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAAC
tttgctctctcttgatatgatgacaagaattatatatttccgctattccaaacagGGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAACCACTCCAAGTGGCTGCAAACAGTGGCAAAGAAACCTGATGCCATTATGT
tcttgat putative branch site (score: 16)
ctattcc putative PPT
acaagaattatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactttcttatataacttagtgtcaatttgctctctcttgatatgatgacaagaattatatatttccgctattccaaacagGGCCTGACAGTTACATGTTCGAAGAGGGGAGGAGAAGCATACCTACCCAACCACTCCAAGTGGCTGCAAACAGTGGCAAAGAAACCTGATGCCATTATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA