1 5' 3' | 2 5' 3' | 3 5' 3' |
CTTCCAGGCGGAGATCAACCAGCTGCTATCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttcatcctcaccccaacccccgatgaccctcgtctatttgcagaccaccgataacccccctccattcgcgggttctagaagtaagactagatct...
species | Zea mays |
transcript | GRMZM2G024668_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAATATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|22521360|gb|BU080171.1|BU080171
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18649392|gb|BM498211.1|BM498211
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18450519|gb|BM428797.1|BM428797
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGGTCGAGAGTNTGACGGACAAGAGCAAGCTGGATEST: gi|18648849|gb|BM497668.1|BM497668
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18649320|gb|BM498139.1|BM498139
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAAC-AGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCC-TGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|19822707|gb|BQ048731.1|BQ048731
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|22818773|gb|BU498863.1|BU498863
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|211138726|gb|FL294024.1|FL294024
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|21843518|gb|BQ704099.1|BQ704099
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18648810|gb|BM497629.1|BM497629
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCTGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|20802426|gb|BQ293476.1|BQ293476
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: AGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|22542460|gb|BU092898.1|BU092898
genomic: AGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18649426|gb|BM498245.1|BM498245
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|16746046|gb|BM032476.1|BM032476
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGATEST: gi|18450520|gb|BM428798.1|BM428798
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
EST: ACTCCAAC-AGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGAT GCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
genomic: ACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttca ... ttccaaacagGCCTTGGATAAGATCAGGTTCGAGAGTTTGACGGACAAGAGCAAGCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCAGGCGGAGATCAACCAGCTGCTATCGCTCATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTTAGGGAGCTCATTTCAAACTCCTCCGATgtgagtttcatcctcaccccaacccccgatgaccctcgtctatttgcagaccaccgataacccccctccattcgcgggttctagaagtaagactagatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc