1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtgtctctgcctcttcacatgtgttatttccctgtattttctaaggttacaacagaactactaacaaagtccatttctcttccttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTCGTTCTTATATGTGTGCGGGTACATGACCAACGAGAGAAACCAGGATAC
species | Zea mays |
transcript | GRMZM2G022453_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211510117|gb|FL332873.1|FL332873
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCEST: gi|211367717|gb|FL344724.1|FL344724
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCC
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGC-ATTCCATGGTTCATTGGAGCTTTEST: gi|211106942|gb|FL338699.1|FL338699
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211361992|gb|FL325584.1|FL325584
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGC-ATTCCATGGGTTCATTGGAGCTTEST: gi|211021435|gb|FL345703.1|FL345703
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGG-TTCATTGGAGCTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|89248089|gb|DY619875.1|DY619875
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211349709|gb|FL339346.1|FL339346
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTTATTGGAGCTTTEST: gi|211317797|gb|FL309524.1|FL309524
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|60397723|gb|DN230539.1|DN230539
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|89248090|gb|DY619876.1|DY619876
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211269693|gb|FL318255.1|FL318255
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|149085931|gb|EE175459.2|EE175459
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211329266|gb|FL352876.1|FL352876
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211171825|gb|FL323733.1|FL323733
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211391286|gb|FL329725.1|FL329725
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|211432570|gb|FL331491.1|FL331491
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACCGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTEST: gi|110519086|gb|EE023673.1|EE023673
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
EST: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCT GTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
genomic: GTGAGAATGAGGCGTCTCCCATGTTGTGGCCTCGGCTTAGGCTGGTGTCTgtgagtgtct ... cttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTT
tttctaaggttacaacagaactactaacaaagtccatttctcttccttgaacaagGTTCATAACTGGGTTTTTCTTGGCTGCCATTCCATGGTTCATTGGAGCTTTCGTTCTTATATGTGTGCGGGTACATGACCAACGAGAGAAACCAGGATAC
tactaac putative branch site (score: 61)
tccatttctcttcctt putative PPT
taacaaa TA-rich tract