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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatccatcccacagagccccccaccccccgagtccgttaatcccgctcctgttctagggtttgattgacaggttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag

Basic information

species Zea mays
transcript GRMZM2G022206_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g07240.1 (Oryza sativa), 5'ss of exon 1
TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgta--cctcatccatcc-cacagagccccccac--cccccgagtccgttaatcccgctcctgttctagggtttgattgacag-gttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag
||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||| ||||   | | ||   |||  |  || |    ||  |    ||| | ||   ||  | |   |     | | ||||  |   || || |                                                                                    
TGATGCGGGACTTCAAGCGGCTGCAGCAGGACCCCCCCGCGGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATCTTCGGgtgggtgtcagccatggacgcggaattcccatctgcctctacctctctccccccctccccctctcctgcgccggccccccggtgttctagggtttcggtg------------------------------------------------------------------------------------

upper sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S91_87V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatccatcccacagagccccccaccccccgagtccgttaatcccgctcctgttctagggtttgattgacaggttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag
||||||| ||||||| |||||||||||| || || || ||||| ||||||||||| ||||| ||||||||||||||| | ||||| || ||||||||||||||||  | |    || |   |     |   |  |  |  |  |  |  ||     ||   |  |    |||    ||   ||||  || |   || | |   ||| ||                                                                     
TGATGCGCGACTTCAAGCGCCTGCAGCATGATCCTCCGGCCGGCATCAGCGGCGCCCCGCAGGACAACAACATCATGTTGTGGAATGCTGTCATATTCGGgtacccaaactcctcccc---gattttcgttctgcatgctcaattgtgtcg-----gtatgaatgcgaaattcgtggggcgcggagatttgcatggcg-gtgtcggttt---------------------------------------------------------------------

upper sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatccatcccacagagccccccaccccccgagtccgttaatcccgctcctgttctagggtttgattgacaggttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag
||||||| ||||||| |||| |||| || || || || ||||| ||||||||||| ||||| |||||||| |||||||| ||||| || || |||||||||||             ||  ||  ||     ||| |  | ||||  |    |   |||    ||   || |    |  |  | |  | |||| ||  |     |||  | ||   | |                                                            
TGATGCGTGACTTCAAGCGCTTGCAACATGATCCTCCGGCCGGCATCAGCGGCGCTCCGCAGGACAACAATATCATGCTGTGGAATGCTGTGATATTCGGgta-------------acgaagtgcc----tccctggtttcgttttttgttcaattgtgtccggtcgtggtgcggaattcgccgggcgtgggagg-cgcacgtcggagtgtcggtttt------------------------------------------------------------

upper sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ16328 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatccatcccacagagccccccaccccccgagtccgttaatcccgctcctgttctagggtttgattgacaggttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag
||||||| ||||||| |||||| || || || || ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||             |   |||| | |  | |  | ||   |  |||   ||| || | | | |||  |                                                                                                            
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtagga----------atgtagccgctcggcactagggt--atcgatctaactcttggtttcgtgttgcag-----------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G022206_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ17802 (Selaginella moellendorffii), 5'ss of exon 1
TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatccatcccacagagccccccaccccccgagtccgttaatcccgctcctgttctagggtttgattgacaggttccggatcttgggggggtgagaaacgggttctcatctattcctttccattttcactcgtgtttgttgtgctgatgagagaggttcgtttgattttgcag
||||||| ||||||| |||||| || || || || ||||| || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||             |   |||| | |  | |  | ||   |  |||   ||| || | | | |||  |                                                                                                            
TGATGCGAGACTTCAAGCGCCTCCAACACGATCCTCCCGCGGGAATCAGCGGCGCGCCGCAGGACAACAACATCATGCTCTGGAACGCGGTGATCTTCGGgtagga----------atgtagccgctcgacactagggt--atcgatctaactcttggtttcgtgttgcag-----------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211169561|gb|FL278094.1|FL278094
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|32860218|gb|CD999899.1|CD999899
EST:     CAACATCGTGCTCTGGAACGCCGTCGTATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: CAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084791|gb|FL278052.1|FL278052
EST:     GGCGCGCC-SACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084789|gb|FL278050.1|FL278050
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGG--G-AG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171238|gb|FL278104.1|FL278104
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211348192|gb|FL266277.1|FL266277
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167877|gb|FL278076.1|FL278076
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169563|gb|FL278096.1|FL278096
EST:     GGCGCGCCGSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211128904|gb|FL240357.1|FL240357
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166199|gb|FL278060.1|FL278060
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|22935577|gb|BU571852.1|BU571852
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60338321|gb|DN205294.1|DN205294
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211172921|gb|FL278123.1|FL278123
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211350597|gb|FL266296.1|FL266296
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60353685|gb|DN220658.1|DN220658
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167885|gb|FL278084.1|FL278084
EST:     GGCGCGCCGSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|26456192|gb|CA827775.1|CA827775
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167880|gb|FL278079.1|FL278079
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGG--G-AG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211353004|gb|FL266308.1|FL266308
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169564|gb|FL278097.1|FL278097
EST:     GGCGCGCCGSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169556|gb|FL278089.1|FL278089
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|4730263|gb|AI649429.1|AI649429
EST:     AACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: AACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171244|gb|FL278110.1|FL278110
EST:     GGCGCGCCSSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171248|gb|FL278114.1|FL278114
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|9794374|gb|BE552682.1|BE552682
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60341172|gb|DN208145.1|DN208145
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211172922|gb|FL278124.1|FL278124
EST:     GGCGCGCCGSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169553|gb|FL278086.1|FL278086
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|6526784|gb|AW216059.1|AW216059
EST:     TCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: TCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|78544014|gb|DV621512.1|DV621512
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211128903|gb|FL240356.1|FL240356
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171240|gb|FL278106.1|FL278106
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167876|gb|FL278075.1|FL278075
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|148948844|gb|EC894251.2|EC894251
EST:     GGCGCGCCGCACGACAACAACATCATGTTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|32860098|gb|CD999779.1|CD999779
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166196|gb|FL278057.1|FL278057
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166203|gb|FL278064.1|FL278064
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084781|gb|FL278042.1|FL278042
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211172914|gb|FL278116.1|FL278116
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGANCGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167879|gb|FL278078.1|FL278078
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60396999|gb|DN229818.1|DN229818
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|32859124|gb|CD998805.1|CD998805
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084779|gb|FL278040.1|FL278040
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166202|gb|FL278063.1|FL278063
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169565|gb|FL278098.1|FL278098
EST:     GGCGCGCCSSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60338193|gb|DN205166.1|DN205166
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211172927|gb|FL278129.1|FL278129
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211093474|gb|FL435484.1|FL435484
EST:     CATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: CATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084792|gb|FL278053.1|FL278053
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|149106076|gb|EE291737.2|EE291737
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|78021945|gb|DV490332.1|DV490332
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|9953749|gb|BE640332.1|BE640332
EST:     GCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60355673|gb|DN222646.1|DN222646
EST:     CGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: CGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|31358879|gb|CD443236.1|CD443236
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|13516022|gb|BG518298.1|BG518298
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171245|gb|FL278111.1|FL278111
EST:     GCGCGCC-CSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTT
genomic: GCGCGCCGC-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTT
EST: gi|211172917|gb|FL278119.1|FL278119
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|30306746|gb|CD001419.1|CD001419
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60348899|gb|DN215872.1|DN215872
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211084783|gb|FL278044.1|FL278044
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171243|gb|FL278109.1|FL278109
EST:     GGCGCGCCGSACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167881|gb|FL278080.1|FL278080
EST:     GGCGCGCCG-ACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|31612243|gb|CD568865.1|CD568865
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211167875|gb|FL278074.1|FL278074
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGYCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211468643|gb|FL261269.1|FL261269
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211174596|gb|FL278135.1|FL278135
EST:     GCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATGATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCAT-ATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171242|gb|FL278108.1|FL278108
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166197|gb|FL278058.1|FL278058
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211166195|gb|FL278056.1|FL278056
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60345347|gb|DN212320.1|DN212320
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60336618|gb|DN203591.1|DN203591
EST:     GCGCGCCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GCGCG-CCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169557|gb|FL278090.1|FL278090
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60344407|gb|DN211380.1|DN211380
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211171234|gb|FL278100.1|FL278100
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|18170360|gb|BM340200.1|BM340200
EST:     GTCATATTCGG                         GCCGGATGATACGCATTGGGACGGAG
genomic: GTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|211169560|gb|FL278093.1|FL278093
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG
EST: gi|60345425|gb|DN212398.1|DN212398
EST:     GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGG                         GCCGGATGATACGCCTTGGGACGGAG
genomic: GGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1125

TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1646

TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 1516

TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 992

TGATGCGGGACTTCAGGCGCCTGCAGCAGGACCCGCCCGCCGGGATCAGCGGCGCGCCGCACGACAACAACATCATGCTCTGGAACGCCGTCATATTCGGgtacctcatc ... gattttgcagGCCGGATGATACGCCTTGGGACGGAG