1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGACATGTGTGGTGGCACAGGGAAATGGAAGGCCCTCAATCGGAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACGgtacgttctttctgcctttctagtgtttatgcaaatgcggcatgtagtttgagatgcatagcctcatgcattcagaaccaatcgtttttactcttttatt...
species | Zea mays |
transcript | GRMZM2G021687_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACG GCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGCEST: gi|211112410|gb|FL107553.1|FL107553
genomic: GAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACGgtacgttctt ... tgtctgttagGCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGC
EST: GAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACG GCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGCCAAACAEST: gi|211520615|gb|FL478735.1|FL478735
genomic: GAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACGgtacgttctt ... tgtctgttagGCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGCCAAACA
EST: GAAGAGGGCGAAAGATGTTTATCAATTCACCGAGTGCCCGAATTGCTACG GCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGCCAAACA
genomic: GAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACGgtacgttctt ... tgtctgttagGCCGCGGAAAGTTGGTGTGCCCTGTCTGTCTCGGAACTGGCCTGCCAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGACATGTGTGGTGGCACAGGGAAATGGAAGGCCCTCAATCGGAAGAGGGCGAAAGATGTTTATGAATTCACCGAGTGCCCGAATTGCTACGgtacgttctttctgcctttctagtgtttatgcaaatgcggcatgtagtttgagatgcatagcctcatgcattcagaaccaatcgtttttactcttttatt
- - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG