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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctagccaacggtcgagatcactgctcgatcctcccatggatcgatgggctgggctgtgtaaagcgatcgatgctctgcctcttcttgtgatcgatcgtacgtcgtcacaagtaaaatgagtgaactgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACGGCGAGCGCGTCCCTGGCCAACAGTGACCTCCCTGGGCCTACCAGCAGCC

Basic information

species Zea mays
transcript GRMZM2G020523_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G020523_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g32050.1 (Oryza sativa), 3'ss of exon 2
gtaagctagccaacggtcgagatcactgctcgatcctcccatggatcgatgggctgggctgtgtaaagcgatcgatgctctgcct-cttcttgtgatcgatcgtacgtcgtcacaagtaaaatgagtgaactgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACGGCGAGCGCGTCCCTGGCCAACAGTGACCTCCCTGGGCCTACCAGCAGCC
                                        |   | ||   ||  |     | |||    | |  |  |  || | ||   | |||   || ||  |   ||    ||    ||  || |     ||||||| || || || || ||| |||| |  ||||| ||||||||| | ||||||||||||||||| ||||||||||| |||||||| | |||  ||  || ||
-------------------------------------attaaaaaacgg-aggtagtatattttaagaaaaacctttttgagcatactatatatgagt-attgtttggtttcttt-gtggtgtgcatgcatgcattgcagCTCGGGGGCCCGTCATGGACGGTCCTCCTGGGGAGGAGGGACTCCACCACGGCGAGCGCGTCGCTGGCCAACAGCGACCTCCCCGCGCCGTCCTCCACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17932143|gb|BM269103.1|BM269103
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|78110954|gb|DV529352.1|DV529352
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|50330214|gb|CO525340.1|CO525340
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|93014704|gb|EB640224.1|EB640224
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGA
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGA
EST: gi|71430666|gb|DR811716.1|DR811716
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGAACATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|149090376|gb|EE179684.2|EE179684
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|211277208|gb|FL063663.1|FL063663
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTNTCCGCTGGGCAGGAGGGACGCGACCAC
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGT-TCCGCTGGGCAGGAGGGACGCGACCAC
EST: gi|211275409|gb|FL063662.1|FL063662
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGAC-ATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|78084057|gb|DV512450.1|DV512450
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|76935157|gb|DV174204.1|DV174204
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|91048009|gb|EB158427.1|EB158427
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|89758624|gb|DY687739.1|DY687739
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|38687661|gb|CK144692.1|CK144692
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|76289009|gb|DV028577.1|DV028577
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|50328204|gb|CO523330.1|CO523330
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|91048790|gb|EB159208.1|EB159208
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|76280543|gb|DV020111.1|DV020111
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
EST: gi|76285538|gb|DV025106.1|DV025106
EST:     TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAA                         CTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG
genomic: TCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCGGTTGCACAAgtaagctagc ... ctgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcttgtgatcgatcgtacgtcgtcacaagtaaaatgagtgaactgcgtgcagCTGGGAGGACCATCGTGGGCGGTTCCGCTGGGCAGGAGGGACGCGACCACGGCGAGCGCGTCCCTGGCCAACAGTGACCTCCCTGGGCCTACCAGCAGCC
                             aagtaaaat  TA-rich tract