Sequence
atgc intronic sequence ATGC exonic sequencegtaagtctcacactggttctctgctttggaatgatgcttcatgtattttgatgacggcaatctttttgaggattgaatgaatccttctaaattcaagtatttggctgtcatatatatatgcgattactgaactatccagtgtatcatcgtcatcagcatcatcagatcttgtttcaattgcgctaaactgaacttgcagGATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACATCACACGTATCGTGACCATGCAACAGCGTGCCAAGCTGCGAGGCGGAATG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32915865|gb|CF020677.1|CF020677EST: GGTTGGCATCGCTGCCGGGTGACCTTCCAACACAGATTGCAGCAACGACA GATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACAT
genomic: GGTTGGCATCGCTGCCGGGTGACCTTCCAACACAGATTGCAGCAACGACAgtaagtctca ... gaacttgcagGATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACAT
EST:
gi|211430461|gb|FL460805.1|FL460805EST: GGTTGGCATCGCTGCCGGGTGACCTTCCAACACAGATTGCAGCAACGACA GATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACAT
genomic: GGTTGGCATCGCTGCCGGGTGACCTTCCAACACAGATTGCAGCAACGACAgtaagtctca ... gaacttgcagGATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcgtcatcagcatcatcagatcttgtttcaattgcgctaaactgaacttgcagGATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACATCACACGTATCGTGACCATGCAACAGCGTGCCAAGCTGCGAGGCGGAATG
cgctaaa putative branch site (score: 3)
tttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtctcacactggttctctgctttggaatgatgcttcatgtattttgatgacggcaatctttttgaggattgaatgaatccttctaaattcaagtatttggctgtcatatatatatgcgattactgaactatccagtgtatcatcgtcatcagcatcatcagatcttgtttcaattgcgctaaactgaacttgcagGATGCCGGGTCGGATACCATGTCTGAGGAGGTGGAAGGGTATGCAAAACATCACACGTATCGTGACCATGCAACAGCGTGCCAAGCTGCGAGGCGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC