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...agaagttgcggttcgaactttgtttttctgttatgaaagtaatataagtggggtcatcctcttataaaaaaaaacctactcatggaaagaggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCTCCGTCGACCATGGGCGGCGAGGGATGCGATAACATGACGATGAT
species | Zea mays |
transcript | GRMZM2G019812_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAG--ACA --CA-GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCEST: gi|148956071|gb|EC901822.2|EC901822
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... ggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
EST: GCATGTCAAGCCAGCAGTTGGTGGATTTCATCCGCGAGCATATAGACACA -G-AGGA--AA-GCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCEST: gi|14244484|gb|BG842495.2|BG842495
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... ggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
EST: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAG--ACA --CA-GAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCEST: gi|3157148|gb|AA979770.1|AA979770
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... ggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
EST: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA -G-AGGA--AA-GCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCEST: gi|9742960|gb|BE519108.1|BE519108
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... ggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
EST: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACA TGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
genomic: GCATGTCAAGCCAGCAGTTGGTCGATTTCATCCGCGAGCATATAGACACAgtaagtacca ... ggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCC
aagtggggtcatcctcttataaaaaaaaacctactcatggaaagaggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCTCCGTCGACCATGGGCGGCGAGGGATGCGATAACATGACGATGAT
ttataaaaaaaaacct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagttgcggttcgaactttgtttttctgttatgaaagtaatataagtggggtcatcctcttataaaaaaaaacctactcatggaaagaggttacgaagTGCAGGAGGAAAGCCTCTCGGCAGTATGCGAGAGAGTGCTCGATAGATGCCTGGCTCCGTCGACCATGGGCGGCGAGGGATGCGATAACATGACGATGAT
- - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - gaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa