1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAGgtgaatgctagattttatttaaaaaaattatattagtgtgtttatcctactattttccattgaatcaaagaaacaaagtatacatgctttgcagtaccga...
species | Zea mays |
transcript | GRMZM2G018929_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAG GTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAGEST: gi|60338982|gb|DN205955.1|DN205955
genomic: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAGgtgaatgcta ... aatgatgcagGTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAG
EST: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAG GTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAGEST: gi|67025364|gb|CO454113.1|CO454113
genomic: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAGgtgaatgcta ... aatgatgcagGTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAG
EST: GCATCGATTGTCTCCAG GTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAGEST: gi|71316418|gb|DR794888.1|DR794888
genomic: GCATCGATTGGCTGCAGgtgaatgcta ... aatgatgcagGTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAG
EST: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAG GTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAG
genomic: GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAGgtgaatgcta ... aatgatgcagGTTCAAGGTTACCAAACGTGACAATCTTGTTACCTACAGAAAAGAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGCTGCAGgtgaatgctagattttatttaaaaaaattatattagtgtgtttatcctactattttccattgaatcaaagaaacaaagtatacatgctttgcagtaccga
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaca