Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGCAGATGCTGCCTTTGAAATAATGAAAGATGCAAGAGCAAAAGGTTTACTCGTTGGAACAATTGCATACAGTTCGTTAATGGGGGCTTGCTGTAATgtaagttgtgtatactcttgcatggaaagcacctctaggattttaactgtgacatgcatgttgttcaataactctatatttttgtaagtaatgtataact...

Basic information

species Zea mays
transcript GRMZM2G018929_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018929_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g10170.2 (Oryza sativa), 5'ss of exon 8
GAGGGCAGATGCTGCCTTTGAAATAATGAAAGATGCAAGAGCAAAAGGTTTACTCGTTGGAACAATTGCATACAGTTCGTTAATGGGGGCTTGCTGTAATgtaagttgtg---tatactcttgcatggaaagcacctc--taggattttaa-ctgtgacatgcatgttgttcaataactctatatttttgtaagtaatgtataact-----------------------------------------------------------------------------
|||||| |||||||||||||| ||||||||||||||||||||||| || |  |  |||||||| |||||||||||||| |||||||| |||||||| |||||||||| ||   || | | ||| ||| ||| ||       | | | ||||  | ||     ||   |     |      | |||     ||  || | | |   |                                                                             
GAGGGCTGATGCTGCCTTTGAGATAATGAAAGATGCAAGAGCAAAGGGATATCAAGTTGGAACCATTGCATACAGTTCATTAATGGGTGCTTGCTGCAATgtaagttctgacataaattgttggatgaaaaccaatataacaagttattaagttctgctccccacagtagcacaaggtcttttatgcacttagttattctttcttttgcaattttacttgtattccatgtacttttgatttgagttcggtgttattatcacgacatttaaattcttgtttcag