Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATAcactagtattccttcaccggggcaggttgccatggcagggatatcaggtatcttactgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G017835_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATAcactagtattccttcaccggggcaggttgccatggcagggatatcaggtatctt-actgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
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------------------------------TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttac-tgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag----------
upper sequence: GRMZM2G017835_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 9
AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATAcactagtattccttcaccggggcaggttgccatggcagggatatcaggtatcttactgtataatcttttaatcttattctctccatttggagc-catttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
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------------------------------TCATTTAGGGAGAACTGCTAGCAGAAGGGATGATCTGGAATCATTAGCATATACACTGATCTTTCTTCACCGAGGTAGATTGCCATGGCAAGGATATCAGgta--ctgcagacctatcattttgttttgtagaatcatgttgttgcatgattctttctctgctaatcctgtctc-ttactcaattttcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32835164|gb|CD974842.1|CD974842EST: TTAGGAAGAACCGCTAGCAGGAGAAGATGATTTGGAGTCACTTGCCTATA G---ATAATAAATCATTTTTTGGTGTGCAAGAGAAAGATGAGT
genomic: TTAGGAAGAACCGCTAGCAGGAGA-GATGATTTGGAGTCACTTGCCTATAcactagtatt ... gtgtttacagGGTGATAATAAATCATTTTT-GGTGTGCAAGAGAAAGATGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATAcactagtattccttcaccggggcaggttgccatggcagggatatcaggtatcttactgtataatcttttaatcttattctctccatttggagccatttttttcttgagtagtcttgtttgaccattgatttttttgtgggacctgtgtttacag
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG