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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTCTGATCCTCATCATCAGGAATAGGCTCAAGTATGCACTGACGTATCTTGAGGTCATTTCTATCCTGATGCAACACTATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggtatacctatatctctattaatgcataaagatacctatacacatattttggttgctgatttgtggtgtcattttttggcag

Basic information

species Zea mays
transcript GRMZM2G015859_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015859_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 3
GCCTCTGATCCTCATCATCAGGAATAGGCTCAAGTATGCACTGACGTATCTTGAGGTCATTTCTATCCTGATGCAACACTATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggt----atacctatatctc-----tattaatgcataaagatacctatacacatattttggttgctgatttgtggtgtcattttttggcag-------------------------------------------------------------------------------------
                                     ||  |||| || | ||| ||  || ||||  | ||||||| |  | |     |||||||||||||| | |||||||||  |||||| || ||||||||||||    | |||     | |     |    | |  |  || |   |||  |  | |  ||  || | ||     || |    ||||   ||                                                                                     
-------------------------------------GCGTTGACCTACCGTGAAGTTGTTGCTATTGTCATGCAACGCCTTATTTCCATTGATGGCAAGGTCCGTACTGACAAGTGCTACCCAGCAGGGTTCATGGgtgagtaaaccagcggcgcaaaaatgcccacgtttttagcttgttatcaatgtctcgtgaatgat-atagtaagtattggcttttcaaagagtttttttcggatataggtcatgtcctgtagtgtactgctgtctcccttcggctcctgagtactctcatctcatcctttgctag

upper sequence: GRMZM2G015859_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 5'ss of exon 3
GCCTCTGATCCTCATCATCAGGAATAGGCTCAAGTATGCACTGACGTATCTTGAGGTCATTTCTATCCTGATGCAACACTATGTACTTGTTGATGGCAAGgtcaggactgacaagacctaccctgctgggttcatgggta--------tacctata-tctctattaatgcataaaga-----tacctatacacatattttggttgctgatttg--tggtgtcattttttggcag---
                                     ||  |||| || |  || ||  || | ||| | ||||| | |    |     |||||||||||||| | |||||||||  ||||||||| || ||||||||||        | | || | || ||   | ||   || |      ||  | |  |||| || |  | |   |  ||  | |||   |   |  |  |   
-------------------------------------GCTTTGACCTACCGCGAAGTAGTTGCCATCGTTATGCAGCGCCTCATCTCCATTGATGGCAAGGTCCGCACTGACAAGTGCTACCCTGCAGGTTTCATGGgtacgttatcttgcatacagtcacttgcactgtgcaatgtctttctaattctctacatgttgtaatcgtaaagatgattagtgctttgcgtaagacgcgc