1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttccatattcggccttgtcctgttaattttcaatttcattgtgacagaatttctgaatatggaaatatgttttttttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCATTTGGGAGAAAAG
species | Zea mays |
transcript | GRMZM2G015097_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGTCAGGCTGCCTTAAGAAGTACTGCGACTGCTACCAG GGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCAEST: gi|50329985|gb|CO525111.1|CO525111
genomic: AAGAAGTCAGGCTGCCTTAAGAAGTACTGCGACTGCTACCAGgttccatatt ... ttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCA
EST: TACTGCGACTGCTACCAG GGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCAEST: gi|211286567|gb|FL198772.1|FL198772
genomic: TACTGCGACTGCTACCAGgttccatatt ... ttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCA
EST: GCACATGCAAGAAGTCAGGCTGCCTTAAGAAGTACTGCGACTGCTACCAG GGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCA
genomic: GCACATGCAAGAAGTCAGGCTGCCTTAAGAAGTACTGCGACTGCTACCAGgttccatatt ... ttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCA
caatttcattgtgacagaatttctgaatatggaaatatgttttttttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCATTTGGGAGAAAAG
tgttttttttattt CT-rich tract
aatttctgaatatgga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccatattcggccttgtcctgttaattttcaatttcattgtgacagaatttctgaatatggaaatatgttttttttatttgaagGGAGGGGCAGGATGCTCCATCAACTGTAAATGCGATGATTGTAGAAACCCATTTGGGAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA