1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGACGAAGTTGTAGTTGCTCTCCTCCGAGAACCCTCGCCGCCGCCACCCACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcgctgagccgtttctccagcagcatcacctatccacctccttcgcgatagtttaagcgccaaagagagttaggccccttggaaacaatctag...
species | Zea mays |
transcript | GRMZM2G013981_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCAEST: gi|211407967|gb|FL261721.1|FL261721
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCAEST: gi|13388467|gb|BG462179.1|BG462179
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATEST: gi|211407968|gb|FL261722.1|FL261722
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGAT
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCAEST: gi|211405412|gb|FL261716.1|FL261716
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
EST: AGCTCCGGTTTGCAGTTCTTCGCTTGAAGGCCATNGGATCACKACAG ATTGAATTTTGCCGAGCACGTCGGCTATTTCGCTTGGAGGTGATTGGGCCAEST: gi|211407964|gb|FL261718.1|FL261718
genomic: AGCTCCGGTTTGCAGTTCTTCGC-TGAAGGCCAT-GGATCACGACAGgtatggggcg ... ctaactacagATTGAA-TTTGCCGAGCACGTCGGCTATTTCGC-TGGAGGTGA-TGGGCCA
EST: CGGAGCTCCGGGTTTGGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCAEST: gi|211405411|gb|FL261715.1|FL261715
genomic: CGGAGCTCC-GGTTT-GCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCAEST: gi|51592994|gb|CV072140.1|CV072140
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
EST: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAG ATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
genomic: ACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcg ... ctaactacagATTGAATTTGCCGAGCACGTCGGCTATTTCGCTGGAGGTGATGGGCCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGACGAAGTTGTAGTTGCTCTCCTCCGAGAACCCTCGCCGCCGCCACCCACCGGAGCTCCGGTTTGCAGTTCTTCGCTGAAGGCCATGGATCACGACAGgtatggggcgctgagccgtttctccagcagcatcacctatccacctccttcgcgatagtttaagcgccaaagagagttaggccccttggaaacaatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaacaa