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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatacaatgtctctattcctatcatgcctcgcaaattcctggatattggatacgtatgtgagccaattttattttagACGCATCTCCGAAGAAGATACAGTTGCTCATGAATGTGAACTCCGTTAGTCGCAAACAGATCTCTGCTCATCTTCAG

Basic information

species Zea mays
transcript GRMZM2G013612_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211498000|gb|FL225388.1|FL225388
EST:     CCATTCCTGCAGAGGAAGTTTTTGCAAGCTGTTGAACTACTTTGGGGA-G                         ACGCATCTCCGAAGGAGATACAGTTGCTCATGAATGTGAACTCCGTTAGT
genomic: CCATTCCTGCAGAGGAAGTTTTTGCAAGCTGTTGAACTACTT-GGGGAAGgtacaataca ... tttattttagACGCATCTCCGAAGAAGATACAGTTGCTCATGAATGTGAACTCCGTTAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcctcgcaaattcctggatattggatacgtatgtgagccaattttattttagACGCATCTCCGAAGAAGATACAGTTGCTCATGAATGTGAACTCCGTTAGTCGCAAACAGATCTCTGCTCATCTTCAG
                                            ttttatttt  CT-rich tract
                                          aattttatttta  TA-rich tract