Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttctgtcctttgcacatacatagcggtcataaaactgtagctgtaacaaccatctactatgcttgcttgatatatttatacgtaccatgtattgtgtgcag

Basic information

species Zea mays
transcript GRMZM2G013457_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G11940.1 (Glycine max), 5'ss of exon 4
CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttctgtcctttgcacatacatagcggtcataaaactgtagctgtaacaaccatctactatgcttgcttgatatatttatacgtaccatgtattgtgtgcag------
 || || || |   || |  ||||||||||||| ||||| ||||||||    |||||||| ||||||||||| ||||| ||  |   |||  ||   |||||     || | |   ||   || |  |  || ||  ||     ||| |    |  | || ||||    |||| ||  ||  ||||| ||    | | || | ||         
TGATAATTATACTTTGAGGATGTTCTGCATTGGGTTTACTAAGAGGCGTAGTAACCAGGTGAAGAGAACCTGTTATGCACAATCGAGCCAAGTTAAACAGgt-----ttgtatatattcaccacaactttcgctccaaa-----tagtt----ccccaatttactggatttgcatgtcat-cttatatgttttctctgttctttgatttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191883|gb|FL273289.1|FL273289
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCNGCCGCA-GATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGA
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCA-CCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGA
EST: gi|33093872|gb|CF053866.1|CF053866
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32866691|gb|CF006373.1|CF006373
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGG
EST: gi|211196689|gb|FL273319.1|FL273319
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATG
EST: gi|211405718|gb|FL168812.1|FL168812
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211196686|gb|FL273316.1|FL273316
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCARGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGA
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGA
EST: gi|60337255|gb|DN204228.1|DN204228
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32826165|gb|CD965843.1|CD965843
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|37421484|gb|CF648442.1|CF648442
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211405719|gb|FL168813.1|FL168813
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCCGCA-GATGGGTGAGATTATGATCAACCAGGCTTCTACATGTGA
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACC-GCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGA
EST: gi|211405717|gb|FL168811.1|FL168811
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCANGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211433536|gb|FL367573.1|FL367573
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|33092784|gb|CF052778.1|CF052778
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|13490925|gb|BG517689.1|BG517689
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211405720|gb|FL168814.1|FL168814
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32943794|gb|CF048613.1|CF048613
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACGTGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|5268465|gb|AI770429.1|AI770429
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|33101931|gb|CF061891.1|CF061891
EST:     CAAACCAGGTCAAGAGAACCCGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211194278|gb|FL273297.1|FL273297
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCANGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACC
EST: gi|14883615|gb|BI273449.1|BI273449
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCA
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCA
EST: gi|211061718|gb|FL342301.1|FL342301
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32826400|gb|CD966078.1|CD966078
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32945338|gb|CF050157.1|CF050157
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTG
EST: gi|32908104|gb|CF012917.1|CF012917
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32856161|gb|CD995842.1|CD995842
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAG
EST: gi|211194287|gb|FL273306.1|FL273306
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGG
EST: gi|23357697|gb|BU645346.1|BU645346
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|33093133|gb|CF053127.1|CF053127
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32808406|gb|CD960640.1|CD960640
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32913372|gb|CF018184.1|CF018184
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211405712|gb|FL168806.1|FL168806
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32826632|gb|CD966310.1|CD966310
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32865002|gb|CF004684.1|CF004684
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|5928702|gb|AW055919.1|AW055919
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211194279|gb|FL273298.1|FL273298
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCARATTCGGCAG                         ATTCGCCGCAAGATGGTTGAG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAG
EST: gi|32945357|gb|CF050176.1|CF050176
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32911278|gb|CF016090.1|CF016090
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211194290|gb|FL273309.1|FL273309
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTG
EST: gi|108823883|gb|EC277891.1|EC277891
EST:     AACCCAGGTCAAGAGAACCCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGTCTTCT
genomic: AACC-AGGTCAAGAGAACC-TGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCT
EST: gi|211189473|gb|FL273266.1|FL273266
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|120480688|gb|EH210958.1|EH210958
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTMTG-CATCCCAGATTCGGCAG                         ATTCGCCGCA-GATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|22520562|gb|BU079373.1|BU079373
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211191877|gb|FL273283.1|FL273283
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGG
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGG
EST: gi|32827546|gb|CD967224.1|CD967224
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGA
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGA
EST: gi|32935553|gb|CF040365.1|CF040365
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|32803585|gb|CD955821.1|CD955821
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|29543819|gb|CB604199.1|CB604199
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|29946636|gb|CB816249.1|CB816249
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211405722|gb|FL168816.1|FL168816
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGCAAGATGGTTGAGATTATGATCAACCAGGCTTCTACATGTGAC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGAC
EST: gi|211090689|gb|FL309328.1|FL309328
EST:     CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAG                         ATTCGCCGSAAGATGGTTGAGATTATGATCAACCAGGC
genomic: CAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1072

CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGACCTAAAAGAACTTGTTTCTAAGTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 558

CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGACCTAAAAGAACTTGTTTCTAAGTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 509

CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGACCTAAAAGAACTTGTTTCTAAGTTCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 549

CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttc ... ttgtgtgcagATTCACCGCAAGATGGATGAGATTATGATCAACCAGGCTTCTACATGTGACCTAAAAGAACTTGTTTCTAAGTTCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACAACTACATGCTGCGTTTGTTCTGCATTGGTTTTACCAAGAGGCGCCCAAACCAGGTCAAGAGAACCTGCTATGCTCAGGCATCCCAGATTCGGCAGgtagcatttctgtcctttgcacatacatagcggtcataaaactgtagctgtaacaaccatctactatgcttgcttgatatatttatacgtaccatgtattgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA