1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGCACGGCAAGATGAGCTACGGGAGGGGGGCCGACGACGGCGAGGGCAACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCGgtatgtataccaccttccaaatccagtcccggtatctagttacagcagtcctaaccgagcgtgcgatcgcaaataataataaaaattgatctag
species | Zea mays |
transcript | GRMZM2G011651_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCG GTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCGEST: gi|50324527|gb|CO519653.1|CO519653
genomic: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCGgtatgtatac ... attgatctagGTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCG
EST: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCG GTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCGEST: gi|74239034|gb|DT646948.1|DT646948
genomic: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCGgtatgtatac ... attgatctagGTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCG
EST: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCG GTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCG
genomic: ACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCGgtatgtatac ... attgatctagGTGAGCGGTGAGTTTCCAATCACAAACGGGTATGGCCACGGCGAGCTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCACGGCAAGATGAGCTACGGGAGGGGGGCCGACGACGGCGAGGGCAACAACACACCGCAGATGCCGCCCATCATCACCGGCGCCCGCTCCGTGCCGgtatgtataccaccttccaaatccagtcccggtatctagttacagcagtcctaaccgagcgtgcgatcgcaaataataataaaaattgatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG