1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctgtcccctcacccttgtgtgtttatgcgataatgtgcatgaaaaatacattatgataccttacgcagattgctgaactaatcaagattttgttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGCGGACATCGCGC
species | Zea mays |
transcript | GRMZM2G011473_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGTCGCTCCGTCGCCAAGCTACAATGCGGACACGAGTTCCACCTAG ATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTEST: gi|30307055|gb|CD001728.1|CD001728
genomic: CGCTGGTCGCTCCGTCGCCAAGCTACAATGCGGACACGAGTTCCACCTAGgtcggatccc ... ttgttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
EST: CGCTGGTCGCTCCGTCGCCAAGCTACAATGCGGACACGAGTTCCACCTAG ATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
genomic: CGCTGGTCGCTCCGTCGCCAAGCTACAATGCGGACACGAGTTCCACCTAGgtcggatccc ... ttgttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
aatacattatgataccttacgcagattgctgaactaatcaagattttgttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGCGGACATCGCGC
aactaat putative branch site (score: 53)
ttttgtt putative PPT
attatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtcccctcacccttgtgtgtttatgcgataatgtgcatgaaaaatacattatgataccttacgcagattgctgaactaatcaagattttgttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGCGGACATCGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa