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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgaggctagctgggttt...

Basic information

species Zea mays
transcript GRMZM2G010599_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g30730.1 (Oryza sativa), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgag--gctagctgggttt
| |||||||| | |||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |   |   || |  |   |   |   |  || |  ||  | |||     | |||||  || |    |   | |    | ||    |   | ||  |
GGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCGCTCGACCTCCGCCCCAAGAAGACCCGCGCCATCCGCAGGCGCCTCACCAAGCACCAGgtatagaaaca-actcgtgtctcttctctttctttgtcccattcgaatgcatctac-cttatactaattggatgtgaattacctcagttattgtttagggct

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g30050.1 (Oryza sativa), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgtt---ccttgcgtctacttcaatgcgttct----ctttcattgctgaag---cgcttattttattgttctaccagtgctgtgaggctagctgggttt
| ||||||||||||||||||||||||||||||  || ||||| ||||| |||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||   ||   |    || |||         | ||   |||    ||     || |  ||   | | |  | |  | |||   ||   || | ||  ||         
GGCGGCGCTGCGTGAGGCGTACAAGAAGAAGAGCCTCCTCCCCCTCGACCTCCGCCCCAAGAAGACCCGCGCCATCCGCCGCCGCCTCACCAAGCACCAGgtataagatttcataaaaccgtgcacacctactactgatatctaaaactcatgctgatagagattcacatggtgtcatcttccttcaa-acttttagctta---------

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G43770.2 (Glycine max), 5'ss of exon 2
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatac---ttatgttccttgcgtctacttc--aatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgaggctagctgggttt
| | ||| || | || || |||||||| ||||||    | || |||||||||||||| ||||||||| | |||||||||||| | || || ||| ||||||| ||||     ||   | ||||    | |||   |||   |  | ||   |   |  | |  |  ||| ||||  ||   | | || |     |   ||     
GGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCCATTCGCAGGAGGCTTACTAAGCACCAGgtttatatgtgctacccttcttgttattccttttaaatatatgtttttcattcattttatcattattttcattg--ctgttattcctctttattttagtgta---

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G38480.1 (Glycine max), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtat-atacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctacca-gtgctgtgaggctagctgggttt-
| | ||| || | || || |||||||| ||||||    | || |||||||||||||| ||||||||| | || ||||||||| | || || ||| |||||||||  |  ||||  |  |||   |||||   ||   |  |||||  |||    |     |  |||| | || |   |  |||  |||   |   |    || 
GGCTGCGTTGAGGGATGCCTACAAGAATAAGAAGTACTTGCCTCTCGATCTCCGCCCTAAGAAGACCAGGGCTATTCGCAGGAGGCTTACTAAGCACCAGgtattgttgttatcattattgtcgctactgttat---tcttctttatttgagtgattatctgatttagttttgtgtaatatgccttgaatgtgtgtcatcttt

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G19650.1 (Glycine max), 5'ss of exon 2
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaat-gcgttctctttcattgctgaagcgcttattttat-tgttctaccagtgctgtgaggctagctgggttt---
  |||||||| | ||||| |||||||||||||||  | | || || || ||||| |||||||||||||||||||||||||| ||||| |||||  |||||||      | ||  || || ||   | |||  | |  |  |  || |||| |   |||  || ||||  | || |  || |  | |     |   ||        
AGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCCCTTGACCTCCGTCCCAAGAAGACCCGCGCCATTCGCAGACGCCTTACCAAACACCAGgt-----ttcattctcttttcgcacaattcttttgtttggttattaattgatttggcgagtaatttaaattttttgtcatttttttattatttaatgttaccact

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G05270.1 (Glycine max), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgaggctagctgggttt---
  |||||||| | ||||| |||||||||||||||  | | || || || || || ||||| ||||||||||||||||| || ||||| |||||  ||||||| |  |||  ||||   ||| ||| |||   |   || |   | | |  ||| | | | |||| | | || |  || |  |  |    || ||   |     
AGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCCCTTGACCTACGTCCCAAAAAGACCCGCGCCATTCGGAGACGCCTTACCAAACACCAGgtttgaactc-tgttttgtgcttcttctttttttttttgttaattaat-ttgaggtg-taatttaaattttttgtcaattttaagtttataactaaatgaaat

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G09500.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttca-atgcgttctctttcattgctgaagcgcttat-tttattgtt------ctaccagtgctg-tgaggctagctgggttt------------
||| || ||  | || || |||||||| |||||| | || || || |||||||| |||||||||||||| || ||||| || |||||||||||  ||||||| | |   ||| ||| ||   || |  ||| |  | ||    |  |||| || |    | ||   |||   |       | | | ||||| ||  | ||  | | | |            
GTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTGCTTCCTCTTGATCTCCGTCCCAAGAAGACCCGTGCTATTCGTAGACGCCTCACCAAACACCAGgtctgt--ctat-ttcgttaaatcaaaatcacaatcatttgtctctattgatgtaattttgatgcctataaatagatcattgcaaatgctgatgtcgttatattgttcttggcatttgcag

upper sequence: GRMZM2G010599_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv00s0317g00130.t01 (Vitis vinifera), 5'ss of exon 3
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgag-gctagctgggttt-------
| | || ||| | || || |||||||| ||||||    | || || ||||| ||||||||||||||| | |||||||||| ||| ||||||||| | |||||| || ||| | ||   |  |      |   ||     | | |  || || |     || |    |||      || |  |||||     |  |   | |       
GGCTGCTCTGAGGGAAGCCTACAAGAACAAGAAGTACTTGCCACTTGATCTGCGCCCCAAGAAGACCAGAGCCATTCGCAAGCGACTCACCAAGCATCAGgta-atccttctttttgatatgatgctcttgttga----tttgttgtttctaata---ttttccggttgaaggttcatttttgtgaatatcaatttaatctttctttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211330996|gb|FK988213.1|FK988213
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211333162|gb|FK988229.1|FK988229
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|67024630|gb|CO453379.1|CO453379
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAATTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211328832|gb|FK988196.1|FK988196
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211023597|gb|FL217585.1|FL217585
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTTTCAT                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211330993|gb|FK988210.1|FK988210
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGCACCAG                         CTCTCCTTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|30704600|gb|CD058563.1|CD058563
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211250381|gb|FL431483.1|FL431483
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211330984|gb|FK988201.1|FK988201
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGCACCAG                         CTCTCCTTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211335320|gb|FK988232.1|FK988232
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|4730667|gb|AI649833.1|AI649833
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211328835|gb|FK988199.1|FK988199
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|67020323|gb|CO449072.1|CO449072
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211328828|gb|FK988192.1|FK988192
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|60400231|gb|DN233038.1|DN233038
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|18176750|gb|BM351683.1|BM351683
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|67023906|gb|CO452655.1|CO452655
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|37379912|gb|CF626727.1|CF626727
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|18166672|gb|BM336511.1|BM336511
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGAAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|30704590|gb|CD058562.1|CD058562
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|89755381|gb|DY685822.1|DY685822
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211333150|gb|FK988217.1|FK988217
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|67022317|gb|CO451066.1|CO451066
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211333156|gb|FK988223.1|FK988223
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGCACCAG                         CTCTCCTTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211333161|gb|FK988228.1|FK988228
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGCACCAG                         CTCTCCTTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|67023749|gb|CO452498.1|CO452498
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211328833|gb|FK988197.1|FK988197
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211330991|gb|FK988208.1|FK988208
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGCGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|32930463|gb|CF035275.1|CF035275
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|29544648|gb|CB605028.1|CB605028
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211330990|gb|FK988207.1|FK988207
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|30307036|gb|CD001709.1|CD001709
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|30306407|gb|CD001080.1|CD001080
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|15199222|gb|BI423722.1|BI423722
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211335323|gb|FK988235.1|FK988235
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
EST: gi|211254801|gb|FL420516.1|FL420516
EST:     TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAG                         CTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG
genomic: TCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatactt ... tgttcttcagCTCTCCTTGAAGACTGAGAGGGAAAAGAAGCGTGAGAAGTATTTTCCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCGATCTCCGCCCCAAGAAGACCCGCGCCATTCGCAGGCGCCTCACCAAGTACCAGgtatatacttatgttccttgcgtctacttcaatgcgttctctttcattgctgaagcgcttattttattgttctaccagtgctgtgaggctagctgggttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG