RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
43 (downstream exon)
Score:
43CATGGGAATGACGATTGGTGCAATGCTTGAAGAAATCCAAACTCTCTACCAACAACACAAACAGTCTTGTTTTCTTTACTTGTCCAGTGAAGTTATCAAGgttgatttat ... ttctttgtagATTTTTGGATCTGATCCATCTTGTGCGGGCTATCTTACTAACTTGATACAAATACTTTTCAGCCATACAGTGCAACTTCTCAGAACGATTCAA
Block sizes:
48 (upstream exon),
44 (downstream exon)
Score:
58CATGGGAATGACGATTGGTGCAATGCTTGAAGAAATCCAAACTCTCTACCAACAACACAAACAGTCTTGTTTTCTTTACTTGTCCAGTGAAGTTATCAAGgttgatttat ... ttctttgtagATTTTTGGATCTGATCCATCTTGTGCGGGCTATCTTACTAACTTGATACAAATACTTTTCAGCCATACAGTGCAACTTCTCAGAACGATTCAA
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
23CATGGGAATGACGATTGGTGCAATGCTTGAAGAAATCCAAACTCTCTACCAACAACACAAACAGTCTTGTTTTCTTTACTTGTCCAGTGAAGTTATCAAGgttgatttat ... ttctttgtagATTTTTGGATCTGATCCATCTTGTGCGGGCTATCTTACTAACTTGATACAAATACTTTTCAGCCATACAGTGCAACTTCTCAGAACGATTCAA
Block sizes:
36 (upstream exon),
42 (downstream exon)
Score:
40CATGGGAATGACGATTGGTGCAATGCTTGAAGAAATCCAAACTCTCTACCAACAACACAAACAGTCTTGTTTTCTTTACTTGTCCAGTGAAGTTATCAAGgttgatttat ... ttctttgtagATTTTTGGATCTGATCCATCTTGTGCGGGCTATCTTACTAACTTGATACAAATACTTTTCAGCCATACAGTGCAACTTCTCAGAACGATTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaacttgaactgtattttttccctgtctgacaatttttttgttttctttgtagATTTTTGGATCTGATCCATCTTGTGCGGGCTATCTTACTAACTTGATACAAATACTTTTCAGCCATACAGTGCAACTTCTCAGAACGATTCAA
gtctgac putative branch site (score: 40)
tttttttgttttcttt putative PPT
aatttttttgttttct TA-rich tract
