1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTACGCTTGCTGTATATCAAAACACTTAGCAACTTCAAAGAGTTTGAGGAGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcatatattattaattagatgcataataatatgtgtattcaactgtatacttcttaacatggaataagatagatatatatatatatatatatat...
species | Zea mays |
transcript | GRMZM2G010356_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAGEST: gi|60356022|gb|DN222995.1|DN222995
genomic: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
EST: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAGEST: gi|37400931|gb|CF637826.1|CF637826
genomic: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
EST: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAGEST: gi|94473816|gb|EB702774.1|EB702774
genomic: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
EST: AGATCTTGGACCCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAGEST: gi|71329812|gb|DR801619.1|DR801619
genomic: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
EST: AGATCTTGGAACCGAACAAGAAGTACGGCATGGCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAACCTACCTAAAGGAAGCCATCTGGTCTAACCAGEST: gi|37383520|gb|CF628779.1|CF628779
genomic: AGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
EST: GCTTACACAAAAGAGGCA TACAAGTTGTGCTCCAAAAACTACTTAAAGGAAGCCATCTGGTCTAACCAG
genomic: GCTTACACAAAAGAGGCAgtatgttcat ... catgatgcagTACAAGTTGTGCTCCAAAAACTACCTAAAGGAAGCCATCTGGTCTAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACGCTTGCTGTATATCAAAACACTTAGCAACTTCAAAGAGTTTGAGGAGATCTTGGAACCGAACAAGAAGTACCGCATGGCTTACACAAAAGAGGCAgtatgttcatatattattaattagatgcataataatatgtgtattcaactgtatacttcttaacatggaataagatagatatatatatatatatatatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG