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gtacgccccggcccgccttgctgctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
species | Zea mays |
transcript | GRMZM2G010044_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185231|gb|FL072185.1|FL072185
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|31355882|gb|CD440239.1|CD440239
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185239|gb|FL072193.1|FL072193
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187626|gb|FL072195.1|FL072195
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|71772889|gb|DR970812.1|DR970812
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187638|gb|FL072207.1|FL072207
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185236|gb|FL072190.1|FL072190
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185238|gb|FL072192.1|FL072192
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211190029|gb|FL072209.1|FL072209
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACEST: gi|211187639|gb|FL072208.1|FL072208
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGAC
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|76909966|gb|DV163627.1|DV163627
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211185232|gb|FL072186.1|FL072186
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGTGCGTCGGAGEST: gi|211185235|gb|FL072189.1|FL072189
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|31354069|gb|CD438426.1|CD438426
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|76012112|gb|DT939282.1|DT939282
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|148955521|gb|EC901145.2|EC901145
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG GTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGEST: gi|211187634|gb|FL072203.1|FL072203
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAG
EST: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCG -TGGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGTCGTCGGA
genomic: GCGTGCGCGCCGTCGCTTCGCCCGCGCGCGCCCTGTCGTCCACCGGCTCGgtacgccccg ... ccgtctccagGTG-AAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGA
ctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
gtttgat putative branch site (score: 1)
ccccgtctcc putative PPT
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccccggcccgccttgctgctctgggcgccgcgtttgattcacataccaacacgcgcggccgccccgtctccagGTGAAGAGCGCGATGACGATGACGGAGAAGATACTGGCGCGGGCGTCGGAGCGCGCGGCGCTGGAGCCCGGGGAGAACGTGTGGGTCGACGTCGACGTGC
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