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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcagaagtgcagaacagcccaacagccgagctgattccagtgttccatgcgtttcagGTGCTGTGGGACAAGCAGCTGAAGACGGTGGTGAACAACGAGAGCTCCGAGATCATCCGGATGCTCAACGACGAGTTCAACGGCATCACCAGGAACCCCG

Basic information

species Zea mays
transcript GRMZM2G009588_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009588_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g21460.1 (Oryza sativa), 3'ss of exon 3
-------------------------------gtacgcagaagtg----cagaacagccc-----aacagccgagctgattccagt------gttccat-gcgtttcagGTGCTGTGGGACAAGCAGCTGAAGACGGTGGTGAACAACGAGAGCTCCGAGATCATCCGGATGCTCAACGACGAGTTCAACGGCATCACCAGGAACCCCG
                               | |  ||  | |     |   |||   |     ||||   |   ||||    ||      |||   | || |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||   ||||||||||  ||| | | ||| || |
gtgagtcgcctgagctctgaacctggggatcggattcaagaatttcctcttcacatttcctatgaacaattggattgatctttgtcattttgttgtgttgcctttcagGTTCTGTGGGACAAGCAGCTCAAGACTGTGGTGAACAATGAGAGCTCAGAGATCATCCGAATGCTCAACACTGAGTTCAACGAGATCGCAAAGAATCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagtgcagaacagcccaacagccgagctgattccagtgttccatgcgtttcagGTGCTGTGGGACAAGCAGCTGAAGACGGTGGTGAACAACGAGAGCTCCGAGATCATCCGGATGCTCAACGACGAGTTCAACGGCATCACCAGGAACCCCG
                          agctgat  putative branch site (score: 4)