1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaatgagaatccctgggttgccaaactagccataaagataaaaaaaacagctgactgaattagcgcaaaccgcacactgatctcgtaacaaacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCGAGCCGTTCCTGATCGATGAGAAGAGGATAACGGCCAAGTACGTGGTGTT
species | Zea mays |
transcript | GRMZM2G009320_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCGEST: gi|211533145|gb|FL165883.1|FL165883
genomic: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtatatactg ... aacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCG
EST: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCNGAAAGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCEST: gi|37394767|gb|CF634660.1|CF634660
genomic: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtatatactg ... aacaatgcagGACC-GAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATC
EST: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCGEST: gi|13126459|gb|BG317029.1|BG317029
genomic: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtatatactg ... aacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCG
EST: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAG GACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCG
genomic: CGACGTCCCTTATTATTTTTGGGCCTTCTTTCCAAAAGGAGACCTCACAGgtatatactg ... aacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCG
aacagctgactgaattagcgcaaaccgcacactgatctcgtaacaaacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCGAGCCGTTCCTGATCGATGAGAAGAGGATAACGGCCAAGTACGTGGTGTT
tcgtaac putative branch site (score: 53)
tgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgagaatccctgggttgccaaactagccataaagataaaaaaaacagctgactgaattagcgcaaaccgcacactgatctcgtaacaaacaatgcagGACCGAAGGGCTTTGCGCTATCGTCCTACAGCAACGAAGTGAGCACCATCGAGCCGTTCCTGATCGATGAGAAGAGGATAACGGCCAAGTACGTGGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - -tccctgg
- - - - - - - - gttgcca
- - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - acagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -actgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcaca