1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCGCCATCTCCTTCACGCTCGGGTGCGCGCTCATCATTGCCTCGCTCTTCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagttaccccgctttgcactactgttacttctacgtttcctgtagtctaaatattaagtctcactttatcatttgggagggcggtatgctgttg...
species | Zea mays |
transcript | GRMZM2G008095_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTATEST: gi|60348667|gb|DN215640.1|DN215640
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTATEST: gi|211358030|gb|FL393767.1|FL393767
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
EST: TCGCGCTTAAGGG-CCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACEST: gi|71313674|gb|DR793416.1|DR793416
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTAC
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTATEST: gi|148960158|gb|EE153408.2|EE153408
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTATEST: gi|71775255|gb|DR973133.1|DR973133
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTATEST: gi|76915953|gb|DV166184.1|DV166184
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
EST: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAG AGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
genomic: TCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagt ... tcctatacagAGGCTACCGTTTTCAGTTGGATTTATTGGATGCATGGTCGGTACAATTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGCCATCTCCTTCACGCTCGGGTGCGCGCTCATCATTGCCTCGCTCTTCGCGCTTAAGGGGCCAGCCAACCAGCTCGCCCACATGACTTCCAAGGAGgtaatgcagttaccccgctttgcactactgttacttctacgtttcctgtagtctaaatattaagtctcactttatcatttgggagggcggtatgctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accccgc