1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctctttagatgttaaggaactaaattattctcatattggcacctgagtacattgacaataagtggtttaataccaattctttttttccag
species | Zea mays |
transcript | GRMZM2G007260_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|110947584|gb|EE167741.1|EE167741
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|18168064|gb|BM337904.1|BM337904
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|37377294|gb|CF625238.1|CF625238
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|12972475|gb|BG268000.1|BG268000
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|18168754|gb|BM338594.1|BM338594
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|94474209|gb|EB703167.1|EB703167
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|149112232|gb|EE191288.2|EE191288
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|94474208|gb|EB703166.1|EB703166
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTTGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|113703398|gb|EE680902.1|EE680902
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|18179315|gb|BM380525.1|BM380525
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTCEST: gi|78122431|gb|DV540815.1|DV540815
genomic: CAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
EST: TGTTCGGTTTGTTTCGAGGATGTTTCACCCAACCA TTTATGCGGATGGAAGCATCTGTTTGGACATCCTCCAAAACCAGTGGAGTC
genomic: TGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctc ... ttttttccagTTTATGCGGATGGAAGCATCTGTTTGGACATCCTACAAAACCAGTGGAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatgttctctttagatgttaaggaactaaattattctcatattggcacctgagtacattgacaataagtggtttaataccaattctttttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG