Sequence
atgc intronic sequence ATGC exonic sequenceGCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g38200.1 (Oryza sativa), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctc-tacaagtaat-aatgcagtgtgtggcacgctggc-aggccagctaatatgtgcatacggctaaatgtgctaagctta
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GCACGACAACGTCGACATTGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGGCTTGAGCACGAGGTCGTCCCTGGCGTCGTGGAGAGCCTTAAGgtatggcgaattccgcttgctgctaactcacctagttgatgtagtgtttgccagggtgcttgggttaatgcgtgtgccgagagaaccccaaatgc--aactt-
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G08920.1 (Glycine max), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgc---atacggctaaatgtgctaagctta
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CCACGACAACGTTGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTCCCCGGCGTGGTCGAAAGCCTCAAGgtactca--ctcacgttcacggtttctttctgctcaagctaaataatagca-gctgaataattaggttttatgatcttaataaaatgaaattaagagaatgaa
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT4G35650.1 (Arabidopsis thaliana), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgta-----tggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta
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ACACGAAAATGTTGATATCGTTGTGATAAGAGAGAACACTGAAGGAGAGTACTCAGGTCTCGAGCATGAGGTTGTTCCTGGTGTTGTCGAGAGCCTTAAGgtaaaccatatataattatagggattgtttt-tagtccaaattgtgatcccttttgtatacatgatgttgttgaattgtttgtgtag------------------
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv03s0038g03120.t01 (Vitis vinifera), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaat--aatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggcta-aatgtgctaagctta
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GCACAATGATGTTGATATTGTTGTGGTGAGGGAGAACACGGAGGGCGAGTACGCTGGGCTTGAGCACGAGGTCGTTCCCGGCGTGGTCGAAAGCCTTAAGgtaacgtctgtt---tggatgcctagagaactggtggaacataaaagaaaatagacttttggttctgttttggtaagaaaaaaaatataaaatgcgaccccta
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0210g00180.t01 (Vitis vinifera), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta-
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GCACCAGAATGTGGATATAGTCGTGATTCGGGAGAATACGGAAGGCGAGTACTCGGGGCTCGAGCACGAGGTCGTTCCCGGTGTCGTGGAAAGCCTTAAGgttttgatttgttattaccttgtctgatggttattttggccgtttccca-atgctgttcaattttccttttctcgattttagaggtagaggatcatttggt
upper sequence: GRMZM2G006672_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S152_81V6.1 (Physcomitrella patens), 5'ss of exon 1
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtat-tgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta----
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CCACGACAATGTCAACATCGTGGTAATTCGGGAGAACACAGAGGGGGAGTACTCTGGTCTTGAACACGAGGTCGTCCCTGGGGTCGTGGAGAGCCTGAAAgtacct---atctcattcacctgcttttgaattgata-tgagttatttatt-tatttatttatttatttatttgtaaacatggacaatgatgcatctgtgaatcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76282383|gb|DV021951.1|DV021951EST: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAG GTCACCCCAAATCTTTATGGCAATCTGGTGGCTAATGTAGCTGCAGGTATT
genomic: ACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaa ... ccttttgtagGTCACCCCAAATCTTTATGGCAATCTGGTGGCTAATGTAGCTGCAGGTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACGACAACGTGGACATCGTCGTCATTCGGGAGAACAGTGAGGGCGAGTACTCGGGGCTCGAGCATGAGGTCGTTCCTGGCGTCGTGGAGAGTCTCAAGgtatggagaattccatgtattgctctacaagtaataatgcagtgtgtggcacgctggcaggccagctaatatgtgcatacggctaaatgtgctaagctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA