1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgatttccatatgacaaatatacaactttttggtgctatttggttgttcacatatatctcgttatcataacaaataaccatttctgttcttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGAGAG
species | Zea mays |
transcript | GRMZM2G005955_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGG GATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGAEST: gi|6021164|gb|AW066092.1|AW066092
genomic: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGGgtagtgctcc ... ttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGA
EST: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGG GATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGAEST: gi|211403433|gb|FL414479.1|FL414479
genomic: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGGgtagtgctcc ... ttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGA
EST: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGG GATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGA
genomic: GTCACACTCTGATGGTGGAGGAGCTTGGTCGGCGGAGGGTCAATCATGGGgtagtgctcc ... ttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGA
tgttcacatatatctcgttatcataacaaataaccatttctgttcttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGAGAG
aaataac putative branch site (score: 95)
ccatttctgttctt CT-rich tract
ttatcataacaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatttccatatgacaaatatacaactttttggtgctatttggttgttcacatatatctcgttatcataacaaataaccatttctgttcttaaatgtagGATGTTTATGTTCTGAGGTTGTACAATCGGTTGAATCAAACAAAGAAAGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - -ccatatg
- - - - - - - - - - atacaac
- - - - - - - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - - - - - ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa