1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttactatttgttgacaatcgtgaattattgtggctatagaatggaagttctcttatttatctgctaggagaagtaactgtgaaaatatctactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGAGAGATTTGAACAACATTTTCTGCAGAATCGTGCATGCTGCGCAGCAGC
species | Zea mays |
transcript | GRMZM2G004459_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|60343446|gb|DN210419.1|DN210419
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|60347607|gb|DN214580.1|DN214580
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|211170842|gb|FL475250.1|FL475250
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|60399644|gb|DN232454.1|DN232454
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|31362359|gb|CD446716.1|CD446716
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|60356872|gb|DN223845.1|DN223845
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|31351610|gb|CD435967.1|CD435967
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|60337295|gb|DN204268.1|DN204268
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: TCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|24765757|gb|CA400916.1|CA400916
genomic: TCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: AAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|83279244|gb|DV943252.1|DV943252
genomic: AAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|78084948|gb|DV513341.1|DV513341
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGAGTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGEST: gi|31352762|gb|CD437119.1|CD437119
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
EST: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGA GTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
genomic: CAAAAGATGATCTTGACCAATCTTCACAAGCTCTACAAGAATCGACTAGAgtaagttttt ... tactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTG
aagttctcttatttatctgctaggagaagtaactgtgaaaatatctactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGAGAGATTTGAACAACATTTTCTGCAGAATCGTGCATGCTGCGCAGCAGC
aagtaac putative branch site (score: 133)
tctactttcc putative PPT
aaaatatctacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttactatttgttgacaatcgtgaattattgtggctatagaatggaagttctcttatttatctgctaggagaagtaactgtgaaaatatctactttccagGTGAGCCAAGACATGGGAATTGAAACACCAATTCCGATCAGCGTGAAGCTGAGAGATTTGAACAACATTTTCTGCAGAATCGTGCATGCTGCGCAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - -tttgttg
- - - - - - - - - - - - - - -tgtggct