Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148991646|gb|EE033181.2|EE033181EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST:
gi|32827371|gb|CD967049.1|CD967049EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGT
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
EST:
gi|211532553|gb|FL475960.1|FL475960EST: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAG GCACGATATGGAACACGAAGCATGGTGGCGCTAGCAGCGAAATTGGAAGGT
genomic: AGTGGGAGTACAAGCTAAGCTCAATATTCATTGACACTGCAAAGGAACAGgcaaaaacca ... ttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctaccattattctgtttggaaataaattatatccatttttcttcttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGTGAGGTAACATTCTATGAAAGGTACTTGGAGAACAGTTTGTGGAAGGAGA
tcttgat putative branch site (score: 4)
tccatttttcttcttg CT-rich tract
attattctgtttggaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaaaaaccatggtgttcagtatttcagtagctaccattattctgtttggaaataaattatatccatttttcttcttgatttcagGCACGATATGGAACACGAAGCATGGTGGCACTAGCAGCGAAATTGGAAGGTGAGGTAACATTCTATGAAAGGTACTTGGAGAACAGTTTGTGGAAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA