Sequence
atgc intronic sequence ATGC exonic sequence...cagttttttgcagtttagtttattccattttttgcagtttagtttatgtttcaattccaagtttatttgttgatgtatctttgtaacaatttttttgcagAGGAATAAGGAAGCAAAAGGTTATAGACATAAGGTTGTGAAGTTTTGGGATCTACTCAGCCTAGTGTACAATAAAGACCAAGCAAATGGAGAGGGTGCTA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtttcaattccaagtttatttgttgatgtatctttgtaacaatttttttgcagAGGAATAAGGAAGCAAAAGGTTATAGACATAAGGTTGTGAAGTTTTGGGATCTACTCAGCCTAGTGTACAATAAAGACCAAGCAAATGGAGAGGGTGCTA
ttgtaac putative branch site (score: 2)
tttttttgc putative PPT
tatctttgtaacaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagttttttgcagtttagtttattccattttttgcagtttagtttatgtttcaattccaagtttatttgttgatgtatctttgtaacaatttttttgcagAGGAATAAGGAAGCAAAAGGTTATAGACATAAGGTTGTGAAGTTTTGGGATCTACTCAGCCTAGTGTACAATAAAGACCAAGCAAATGGAGAGGGTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta