1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgctactctaatttatataaactttgattagctgtaacgattccgggtgcaatccgacacaaacgaacatggcctaaaggtggctctcggctctctccagCCCCGACTCCAAGAAGTTGGCGGTCGCATCCGGCGTATCGAGGTCGGTGCTCTTCCTGCTCGTCGACGTCGCTGTCAAAGCTGTTGAGTCCGAGATCACT
species | Zea mays |
transcript | AC234515.1_FGT002 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
ggtgcaatccgacacaaacgaacatggcctaaaggtggctctcggctctctccagCCCCGACTCCAAGAAGTTGGCGGTCGCATCCGGCGTATCGAGGTCGGTGCTCTTCCTGCTCGTCGACGTCGCTGTCAAAGCTGTTGAGTCCGAGATCACT
gcctaaa putative branch site (score: 3)
ctctcggctctctcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctactctaatttatataaactttgattagctgtaacgattccgggtgcaatccgacacaaacgaacatggcctaaaggtggctctcggctctctccagCCCCGACTCCAAGAAGTTGGCGGTCGCATCCGGCGTATCGAGGTCGGTGCTCTTCCTGCTCGTCGACGTCGCTGTCAAAGCTGTTGAGTCCGAGATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
tgctact
- - - - - - - - - - - - - - -agctgta
- - - - - - - - - - - - - - - - - - - - - -cgggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacatg