1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatcaataatgtttggtttccagccgcattctccgacccgcattctcattatttagtgcaaaccaaacgccctctgagttcctttgcttctgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGTACCATTGAACAATCGGGGTCCTGTGACGCTTGAGAGTTCCAGTTCATT
species | Zea mays |
transcript | AC233960.1_FGT002 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|71764058|gb|DR961995.1|DR961995
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|76017431|gb|DT944601.1|DT944601
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|32858151|gb|CD997832.1|CD997832
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCTACCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|78107636|gb|DV526054.1|DV526054
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|149096469|gb|EE182211.2|EE182211
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|149095768|gb|EE181411.2|EE181411
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|78107663|gb|DV526081.1|DV526081
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|89247323|gb|DY619109.1|DY619109
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGEST: gi|74242087|gb|DT650001.1|DT650001
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
EST: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCG GACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
genomic: TGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccac ... tgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAG
tcattatttagtgcaaaccaaacgccctctgagttcctttgcttctgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGTACCATTGAACAATCGGGGTCCTGTGACGCTTGAGAGTTCCAGTTCATT
ttctgat putative branch site (score: 34)
ttcctttgcttct CT-rich tract
atttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcaataatgtttggtttccagccgcattctccgacccgcattctcattatttagtgcaaaccaaacgccctctgagttcctttgcttctgatgcgcagGACATACATTTCCAGGGTATGCAGCTCAAGGAGACACCTGCACCGATTGAGTACCATTGAACAATCGGGGTCCTGTGACGCTTGAGAGTTCCAGTTCATT
- - - - atgtttg
- - - - - - - - - - cagccgc
- - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacca