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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacatgcacttccatttcacttagcatcattatgcaacaatataataatgcgtgctaagcagcttacgcacaagagcatgcatgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC

Basic information

species Zea mays
transcript AC210517.3_FGT003
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78078649|gb|DV507061.1|DV507061
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077673|gb|FL199426.1|FL199426
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080412|gb|FL199443.1|FL199443
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|71447056|gb|DR828106.1|DR828106
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|101385176|gb|EB814634.1|EB814634
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080411|gb|FL199442.1|FL199442
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080408|gb|FL199439.1|FL199439
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077672|gb|FL199425.1|FL199425
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077680|gb|FL199433.1|FL199433
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080413|gb|FL199444.1|FL199444
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|88756493|gb|DY540634.1|DY540634
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211074941|gb|FL199421.1|FL199421
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077682|gb|FL199435.1|FL199435
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080407|gb|FL199438.1|FL199438
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCANTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077679|gb|FL199432.1|FL199432
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|14701505|gb|BI233923.1|BI233923
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCTGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077678|gb|FL199431.1|FL199431
EST:     TGCGCTCTCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|71446942|gb|DR827992.1|DR827992
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|30306959|gb|CD001632.1|CD001632
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077681|gb|FL199434.1|FL199434
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077676|gb|FL199429.1|FL199429
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080409|gb|FL199440.1|FL199440
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077683|gb|FL199436.1|FL199436
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211074942|gb|FL199422.1|FL199422
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077674|gb|FL199427.1|FL199427
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077675|gb|FL199428.1|FL199428
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|71442320|gb|DR823370.1|DR823370
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|88756492|gb|DY540633.1|DY540633
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077677|gb|FL199430.1|FL199430
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080415|gb|FL199446.1|FL199446
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|40302761|gb|CK347148.1|CK347148
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077684|gb|FL199437.1|FL199437
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCSCSCGCSGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080414|gb|FL199445.1|FL199445
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|149076598|gb|EE165233.2|EE165233
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211077670|gb|FL199423.1|FL199423
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080410|gb|FL199441.1|FL199441
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
EST: gi|211080416|gb|FL199447.1|FL199447
EST:     TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTG                         CTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA
genomic: TGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 46 (downstream exon)
Score: 43

CGGCTTTCTGCTTCCGTGAAATGCCGTCGGCGGGCACTCACCGTGACCTGTGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC


Block sizes: 43 (upstream exon), 47 (downstream exon)
Score: 30

CGGCTTTCTGCTTCCGTGAAATGCCGTCGGCGGGCACTCACCGTGACCTGTGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC


Block sizes: 48 (upstream exon), 43 (downstream exon)
Score: 43

CGGCTTTCTGCTTCCGTGAAATGCCGTCGGCGGGCACTCACCGTGACCTGTGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC


Block sizes: 33 (upstream exon), 43 (downstream exon)
Score: 5

CGGCTTTCTGCTTCCGTGAAATGCCGTCGGCGGGCACTCACCGTGACCTGTGCGCTCCCGGAGAAAGAACGGCCGGCGGCATTCAACATCCCGCCCACTGgtgagtacat ... tgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatataataatgcgtgctaagcagcttacgcacaagagcatgcatgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC
                       agcttac  putative branch site (score: 5)
     taataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtacatgcacttccatttcacttagcatcattatgcaacaatataataatgcgtgctaagcagcttacgcacaagagcatgcatgcgtttcagCTCTGCTGTGCCCCGTGCCCCCGCCGGACGGCAAGGAACGGTGGGACATCAAGGAGGAAGATGACCGCGTCACGCTGTGGCTCCAGGTGCCAGGGCTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG