Sequence
atgc intronic sequence ATGC exonic sequence...tgtagggtcttgcaagtcgcggatcgcccggcaacgctccaagtcccgcgtgctcctgcactgactccggaccggagcatctgcacgctgtcctgtgcagGCAGTCACGCAGGTTTCAGCGGCCGCCGTGTGAGGTTGGAGCACACAAAGGCCCAGGTCTGGACATTCATGGCTCGATGGGAGCCGGATCCAGGTCCAGC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccgcgtgctcctgcactgactccggaccggagcatctgcacgctgtcctgtgcagGCAGTCACGCAGGTTTCAGCGGCCGCCGTGTGAGGTTGGAGCACACAAAGGCCCAGGTCTGGACATTCATGGCTCGATGGGAGCCGGATCCAGGTCCAGC
cactgac putative branch site (score: 2)
ctgtcct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtagggtcttgcaagtcgcggatcgcccggcaacgctccaagtcccgcgtgctcctgcactgactccggaccggagcatctgcacgctgtcctgtgcagGCAGTCACGCAGGTTTCAGCGGCCGCCGTGTGAGGTTGGAGCACACAAAGGCCCAGGTCTGGACATTCATGGCTCGATGGGAGCCGGATCCAGGTCCAGC
- - - -tcttgca
- - - - - - - - - - - - - cccggca
- - - - - - - - - - - - - - - - - cgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacgc