Sequence
atgc intronic sequence ATGC exonic sequence...catcatcaaaaccgtatactgtgtgtattgtgctgcgcagaaaactattcggacggcctgtctgctggattgactagggccgttctctggattctttcagGCGGTGGATCGACGCCGTCCACGGAGGGTTTTATGTACAGGTTGAACATGACGTTGGTGAAGATGGTGAGGATGACGAGTCCAAGCGTCGAGAACGCCAC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattcggacggcctgtctgctggattgactagggccgttctctggattctttcagGCGGTGGATCGACGCCGTCCACGGAGGGTTTTATGTACAGGTTGAACATGACGTTGGTGAAGATGGTGAGGATGACGAGTCCAAGCGTCGAGAACGCCAC
gattgac putative branch site (score: 3)
ttctttc putative PPT
attcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catcatcaaaaccgtatactgtgtgtattgtgctgcgcagaaaactattcggacggcctgtctgctggattgactagggccgttctctggattctttcagGCGGTGGATCGACGCCGTCCACGGAGGGTTTTATGTACAGGTTGAACATGACGTTGGTGAAGATGGTGAGGATGACGAGTCCAAGCGTCGAGAACGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -catcaaa
- - - - - - - - tactgtg
- - - - - - - - - - - - - - -gtgctgc
- - - - - - - - - - - - - - - - - - gcagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -cggcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg