Sequence
atgc intronic sequence ATGC exonic sequence...acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA08G06090.2 (Glycine max), 3'ss of exon 1
-------------------------------------acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
| | ||||| | | || | || | ||| |||| ||| || || || | | | | || || ||| || ||||||||| ||| || |||||||| |||||||||||||| | ||||| || ||||||||||| | || || || | |
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagTCTGAAA--AATGAACTTGCAGATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAG--------------------
upper sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA08G06090.1 (Glycine max), 3'ss of exon 1
-------------------------------------acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
| | ||||| | | || | || | ||| |||| ||| || || || | | | | || || ||| || ||||||||| ||| || |||||||| |||||||||||||| | ||||| || ||||||||||| | || || || | | | || ||| | || |||
gtttgcttttatgttatgtcattcatgcaaatatataatatgtgaaaactgaaaacttgtattcctgcacatta-attcatgttagattctttatataattcatgttcattgtagtctgaaa--aatgaacttgcagATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTAACTAGTGACCATGACAACGCGTTTC
upper sequence: AC202435.3_FGT003 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA05G33630.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------------------acgcacgggcactgacctataatgttgaa----gttcagaatatttgact----taggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
| | | | | | ||| ||| | | || | | | | || || ||| | | | | || | ||| ||||||||| ||| || |||||||| |||||||||||||| | ||||| || ||||||||||| | || || || | | | || ||| | || |||
gtttgcttttatgtttgtgtgattcatgcaaatatgtgtgaaaactgaaaacttgtattccggcacattaattaatgttagattattttttatgttctagatagaatttcgtttatagcatctagttgctcctcgttgtagttattatcctcttcttttatggtgaaaaaatgaacttttc--agATGGGAAAGGTTGGAGAGAAGCTTGATATCGACTTTGTAGTTTCCACTGGAGACAACTTCTATGACAATGGACTGACTAGTGACCATGACAACGCGTTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
aactaat putative branch site (score: 2)
tttttat putative PPT
aaatttgcaatcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acgcacgggcactgacctataatgttgaagttcagaatatttgacttaggatctaactaatatgtttggcctgggaaatttgcaatcaatttttatgtagATGGGAAGGGTCGGGGAGAAGCTCGATATCGACTTTGTTATATCCACCGGGGACAACTTCTACAAGAACGGCCTCAAGGGCGTGCACGACCAGGCATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - gcactga
- - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttgca